Resource

Id Histone_ChIP-seq/ENCSR486QMVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR486QMV [biosample_summary="Homo sapiens caudate nucleus tissue female adult (75 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR486QMV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001873/
  • biosample_summary: Homo sapiens caudate nucleus tissue female adult (75 years)
  • date_created: 2015-09-15T19:52:05.698221+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR486QMV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (75 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR486QMV float

Histone_ChIP-seq_ENCSR486QMV
Histone_ChIP-seq ENCSR486QMV [biosample_summary="Homo sapiens caudate nucleus tissue female adult (75 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR486QMV [1.79, 53.1]
n
43,913,387
mean
14.2
sd
8.61

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 439133871.36% 50199
chr1 4262248 1.71% 4741
chr1_KI270713v1_random 769 1.89% 2
chr2 3108164 1.28% 3602
chr3 2647481 1.34% 2893
chr4 1915767 1.01% 2150
chr5 2304988 1.27% 2630
chr6 2688893 1.57% 3012
chr7 2071067 1.30% 2451
chr8 1763173 1.21% 2087
chr9 1803264 1.30% 2084
chr10 1975805 1.48% 2336
chr11 2375146 1.76% 2635
chr12 2308129 1.73% 2572
chr13 1061133 0.93% 1273
chr14 1489113 1.39% 1616
chr15 1374874 1.35% 1586
chr16 1593522 1.76% 1832
chr17 2243658 2.69% 2568
chr18 857650 1.07% 1071
chr19 2475319 4.22% 2817
chr20 1083739 1.68% 1253
chr21 426095 0.91% 520
chr22 890621 1.75% 1027
chr22_KI270736v1_random 260 0.14% 1
chrUn_GL000216v2 212 0.12% 1
chrUn_GL000219v1 1666 0.93% 4
chrUn_KI270442v1 572 0.15% 1
chrX 1190059 0.76% 1434
3338 contigs with no values (185333968 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50199 170 7611 874.79 598
global segment-length histogram

Files

Filename Size md5
ENCFF788TVU.bed.gz 1.12 MB ba6ca3f9453188ed001a76a076825dcc
ENCFF788TVU.tabix.bed.gz 532.48 KB 815c9907cefc17e2aec3d0725a343019
ENCFF788TVU.tabix.bed.gz.tbi 225.36 KB 041511a0207a64a49405e66775b22b8e
genomic_resource.yaml 1.52 KB 72a43eeb03ea2ae5675566a2b619b74d
statistics/