Resource
| Id | Histone_ChIP-seq/ENCSR482XTC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR482XTC [biosample_summary="Homo sapiens SJSA1" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN257NEN|/analyses/ENCAN257NEN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF757YBM|/files/ENCFF757YBM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF757YBM|/files/ENCFF757YBM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.95. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR482XTC | float |
Histone_ChIP-seq_ENCSR482XTC |
Histone_ChIP-seq ENCSR482XTC [biosample_summary="Homo sapiens SJSA1" and target="H3K9me3"]
|
 |
[1.15, 32] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 18568361 | 0.58% | 42012 |
| chr1 | 1268560 | 0.51% | 3065 |
| chr2 | 1376728 | 0.57% | 3534 |
| chr3 | 361746 | 0.18% | 967 |
| chr4 | 607072 | 0.32% | 1597 |
| chr5 | 2786182 | 1.53% | 5532 |
| chr6 | 823264 | 0.48% | 2118 |
| chr7 | 955330 | 0.60% | 2363 |
| chr8 | 1812427 | 1.25% | 3989 |
| chr9 | 237758 | 0.17% | 551 |
| chr10 | 998670 | 0.75% | 2484 |
| chr11 | 881958 | 0.65% | 1481 |
| chr12 | 895594 | 0.67% | 1927 |
| chr13 | 532598 | 0.47% | 1161 |
| chr14 | 174009 | 0.16% | 456 |
| chr15 | 435097 | 0.43% | 1053 |
| chr16 | 568881 | 0.63% | 1322 |
| chr17 | 760104 | 0.91% | 1670 |
| chr18 | 528001 | 0.66% | 1351 |
| chr19 | 1628911 | 2.78% | 3169 |
| chr20 | 364356 | 0.57% | 883 |
| chr21 | 257811 | 0.55% | 622 |
| chr22 | 259366 | 0.51% | 576 |
| chrX | 52455 | 0.03% | 137 |
| chrY | 1483 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 42012 | 180 | 8282 | 441.98 | 348 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF921OTR.bed.gz | 845.79 KB | d1675611254c69423a3e417e8f987456 |
| ENCFF921OTR.tabix.bed.gz | 419.43 KB | 3693a9e84d6f261f98bc8cd99cb9f9db |
| ENCFF921OTR.tabix.bed.gz.tbi | 194.33 KB | 7ccd25997e445aa96032c594f3c10eb9 |
| genomic_resource.yaml | 2.68 KB | 57519ff5784235d60d2da89f22d2633e |
| statistics/ |