Resource

Id Histone_ChIP-seq/ENCSR482OKNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR482OKN [biosample_summary="Homo sapiens transverse colon tissue male adult (54 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR482OKN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue male adult (54 years)
  • date_created: 2017-12-06T21:13:55.375852+00:00
  • date_released: 2020-01-23
  • doi: 10.17989/ENCSR482OKN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR482OKN float

Histone_ChIP-seq_ENCSR482OKN
Histone_ChIP-seq ENCSR482OKN [biosample_summary="Homo sapiens transverse colon tissue male adult (54 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR482OKN [1.33, 8.94]
n
57,399,376
mean
3.57
sd
0.856

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 573993761.78% 116580
chr1 6061842 2.43% 11900
chr2 4404182 1.82% 9428
chr3 3579556 1.81% 7599
chr4 2382272 1.25% 5352
chr5 2823573 1.56% 5933
chr6 3123766 1.83% 6663
chr7 2622231 1.65% 5673
chr8 2178425 1.50% 4676
chr9 2739437 1.98% 5497
chr10 2877319 2.15% 5877
chr11 3191582 2.36% 6230
chr12 2966896 2.23% 5938
chr13 1179140 1.03% 2574
chr14 2130782 1.99% 4185
chr15 2168191 2.13% 4263
chr16 2222961 2.46% 4283
chr17 3368778 4.05% 6159
chr18 980796 1.22% 2149
chr19 2427391 4.14% 4414
chr20 1677225 2.60% 3256
chr21 685460 1.47% 1421
chr22 1419699 2.79% 2605
chrX 184382 0.12% 493
chrY 3490 0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 116580 90 9727 492.36 377
global segment-length histogram

Files

Filename Size md5
ENCFF940ZNY.bed.gz 2.51 MB e506ae85f6031fb36c7e8e7662afdd94
ENCFF940ZNY.tabix.bed.gz 1.17 MB d2644176c294fabcd0c976b48bea5953
ENCFF940ZNY.tabix.bed.gz.tbi 298.61 KB 928c0e66ad284e242318e22863a02d35
genomic_resource.yaml 1.51 KB 5da22eac4b9f4ea624f5316cd706a1e9
statistics/