Resource

Id Histone_ChIP-seq/ENCSR481IYIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR481IYI [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K36me3"]
Description
Labels
  • accession: ENCSR481IYI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (62 years)
  • date_created: 2014-02-20T05:41:49.303064+00:00
  • date_released: 2017-12-01
  • doi: 10.17989/ENCSR481IYI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (62 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H3K36me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR481IYI float

Histone_ChIP-seq_ENCSR481IYI
Histone_ChIP-seq ENCSR481IYI [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K36me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR481IYI [2.12, 10.8]
n
1,064,830
mean
4.52
sd
1.34

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 10648300.03% 2525
chr1 63106 0.03% 176
chr2 54046 0.02% 166
chr3 53263 0.03% 163
chr4 51540 0.03% 146
chr5 77800 0.04% 196
chr6 59936 0.04% 148
chr7 75316 0.05% 173
chr8 33932 0.02% 107
chr9 39549 0.03% 99
chr10 39835 0.03% 103
chr11 15560 0.01% 31
chr12 52645 0.04% 135
chr13 12208 0.01% 41
chr14 18582 0.02% 61
chr15 16873 0.02% 50
chr16 24648 0.03% 48
chr17 22060 0.03% 58
chr18 11654 0.01% 37
chr19 316967 0.54% 527
chr20 14501 0.02% 27
chr21 3645 0.01% 13
chr22 4767 0.01% 12
chrX 1557 <0.01% 6
chrY 840 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 2525 180 5571 421.71 314
global segment-length histogram

Files

Filename Size md5
ENCFF845LSE.bed.gz 48.42 KB dc6f13b6bf38ad6e05a9928466661783
ENCFF845LSE.tabix.bed.gz 25.73 KB 72c33c5eb97538967052e4d29c13ea90
ENCFF845LSE.tabix.bed.gz.tbi 23.9 KB a1ff01c873aa0379a83f5b96bb9bb4d2
genomic_resource.yaml 2.54 KB 017875d7e0686bede34be599526fe908
statistics/