Resource
| Id | Histone_ChIP-seq/ENCSR479YCJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR479YCJ [biosample_summary="Homo sapiens thymus tissue female embryo (110 days)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (110 days) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN948XTM|/analyses/ENCAN948XTM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF460VGW|/files/ENCFF460VGW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19145518 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR479YCJ | float |
Histone_ChIP-seq_ENCSR479YCJ |
Histone_ChIP-seq ENCSR479YCJ [biosample_summary="Homo sapiens thymus tissue female embryo (110 days)" and target="H3K4me1"]
|
 |
[1.93, 47.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 93616232 | 2.91% | 121512 |
| chr1 | 9169690 | 3.68% | 11628 |
| chr2 | 7718727 | 3.19% | 10186 |
| chr3 | 5827450 | 2.94% | 8069 |
| chr4 | 2846145 | 1.50% | 4358 |
| chr5 | 4006893 | 2.21% | 5655 |
| chr6 | 5338899 | 3.13% | 7567 |
| chr7 | 4138029 | 2.60% | 5728 |
| chr8 | 3472124 | 2.39% | 4869 |
| chr9 | 3917489 | 2.83% | 4903 |
| chr10 | 4711908 | 3.52% | 6047 |
| chr11 | 4798215 | 3.55% | 5811 |
| chr12 | 4622168 | 3.47% | 5916 |
| chr13 | 1940349 | 1.70% | 2944 |
| chr14 | 3596741 | 3.36% | 4561 |
| chr15 | 3221793 | 3.16% | 4095 |
| chr16 | 4020202 | 4.45% | 4529 |
| chr17 | 5984204 | 7.19% | 6752 |
| chr18 | 1606498 | 2.00% | 2325 |
| chr19 | 3981005 | 6.79% | 4676 |
| chr20 | 2538350 | 3.94% | 3244 |
| chr21 | 1527851 | 3.27% | 1765 |
| chr22 | 2855058 | 5.62% | 3256 |
| chrX | 1776444 | 1.14% | 2628 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 121512 | 160 | 29410 | 770.43 | 521 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF994IZO.bed.gz | 2.59 MB | 3d35351b38d006fcf620e46cedc3e15e |
| ENCFF994IZO.tabix.bed.gz | 1.21 MB | e7dbb1fc7513b9024012e004e99c91f3 |
| ENCFF994IZO.tabix.bed.gz.tbi | 270.75 KB | 9082b96230467048b4a8a575a1e530fc |
| genomic_resource.yaml | 1.98 KB | f446502b335583fbf064d9994d6eb99b |
| statistics/ |