Resource
| Id | Histone_ChIP-seq/ENCSR479GJI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR479GJI [biosample_summary="Homo sapiens temporal lobe tissue female adult (75 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN612IHC|/analyses/ENCAN612IHC/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF614VMG|/files/ENCFF614VMG/} processed by ChIP-seq ENCODE3 hg19 pipeline has 27346386 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR479GJI | float |
Histone_ChIP-seq_ENCSR479GJI |
Histone_ChIP-seq ENCSR479GJI [biosample_summary="Homo sapiens temporal lobe tissue female adult (75 years)" and target="H3K4me1"]
|
 |
[1.86, 19.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 54709416 | 1.70% | 114877 |
| chr1 | 5885067 | 2.36% | 11799 |
| chr2 | 4179382 | 1.73% | 8783 |
| chr3 | 3124573 | 1.58% | 6830 |
| chr4 | 1918816 | 1.01% | 4373 |
| chr5 | 2780689 | 1.53% | 6155 |
| chr6 | 2668058 | 1.56% | 5934 |
| chr7 | 2446090 | 1.54% | 5484 |
| chr8 | 2017011 | 1.39% | 4427 |
| chr9 | 2819990 | 2.04% | 5708 |
| chr10 | 3043738 | 2.27% | 6109 |
| chr11 | 3657849 | 2.71% | 7209 |
| chr12 | 2354979 | 1.77% | 5136 |
| chr13 | 1114463 | 0.97% | 2547 |
| chr14 | 1929907 | 1.80% | 4033 |
| chr15 | 1940043 | 1.90% | 4043 |
| chr16 | 2100839 | 2.33% | 4274 |
| chr17 | 3238428 | 3.89% | 6350 |
| chr18 | 1044015 | 1.30% | 2408 |
| chr19 | 2148471 | 3.67% | 4327 |
| chr20 | 1721443 | 2.67% | 3448 |
| chr21 | 581137 | 1.24% | 1275 |
| chr22 | 1600795 | 3.15% | 3107 |
| chrX | 393633 | 0.25% | 1118 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 114877 | 160 | 8530 | 476.24 | 368 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF269CDZ.bed.gz | 2.16 MB | e4b8679328d4876bea3308dc5921a65b |
| ENCFF269CDZ.tabix.bed.gz | 1.09 MB | a2e828c85bd34e271f11c0b4d0a5b929 |
| ENCFF269CDZ.tabix.bed.gz.tbi | 309.9 KB | 62504da2d8a0922723166ec05bd4e0bb |
| genomic_resource.yaml | 2.0 KB | 5dc0723d62c3a9bed62ce672080f05f7 |
| statistics/ |