Resource

Id Histone_ChIP-seq/ENCSR479APWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR479APW [biosample_summary="Homo sapiens spleen tissue male adult (26 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR479APW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002106/
  • biosample_summary: Homo sapiens spleen tissue male adult (26 years)
  • date_created: 2020-05-01T03:02:53.943986+00:00
  • date_released: 2020-09-03
  • doi: 10.17989/ENCSR479APW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (26 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR479APW float

Histone_ChIP-seq_ENCSR479APW
Histone_ChIP-seq ENCSR479APW [biosample_summary="Homo sapiens spleen tissue male adult (26 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR479APW [1.61, 18.4]
n
176,053,356
mean
5.24
sd
2.02

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1760533565.47% 127624
chr1 17497889 7.03% 12614
chr2 13611363 5.62% 10102
chr3 10989384 5.54% 8484
chr4 6032926 3.17% 4908
chr5 8346249 4.60% 6280
chr6 9692433 5.67% 7346
chr7 8245827 5.17% 6350
chr8 6929342 4.77% 5276
chr9 7580337 5.48% 5396
chr10 8720952 6.52% 6405
chr11 9612862 7.12% 6624
chr12 8898583 6.68% 6417
chr13 3681822 3.22% 2899
chr14 6362579 5.94% 4566
chr15 6295621 6.17% 4454
chr16 7192539 7.96% 4803
chr17 10636620 12.78% 6873
chr18 2973741 3.70% 2376
chr19 8318463 14.19% 5274
chr20 5544671 8.60% 3749
chr21 2086867 4.47% 1538
chr22 4874847 9.59% 3157
chrX 1869794 1.20% 1671
chrY 57645 0.10% 62
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 127624 205 43421 1379.47 921
global segment-length histogram

Files

Filename Size md5
ENCFF124NME.bed.gz 2.62 MB 414102810b8a8d793440c248b7f2d5e6
ENCFF124NME.tabix.bed.gz 1.27 MB 62be5d2a394efb49ba4f3d59f74f10a5
ENCFF124NME.tabix.bed.gz.tbi 276.77 KB d08b3ab4f9c5cd67f8fbd5021f46a3d8
genomic_resource.yaml 1.7 KB 5f08ce697afb5eca2e3311d5c977655b
statistics/