Resource

Id Histone_ChIP-seq/ENCSR478BKAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR478BKA [biosample_summary="Homo sapiens esophagus tissue female adult (30 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR478BKA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001043/
  • biosample_summary: Homo sapiens esophagus tissue female adult (30 years)
  • date_created: 2015-10-01T07:17:10.338762+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR478BKA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR478BKA float

Histone_ChIP-seq_ENCSR478BKA
Histone_ChIP-seq ENCSR478BKA [biosample_summary="Homo sapiens esophagus tissue female adult (30 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR478BKA [1.83, 10.6]
n
11,822,962
mean
4.41
sd
0.953

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 118229620.37% 35005
chr1 1214036 0.49% 3615
chr2 920822 0.38% 2800
chr3 607418 0.31% 1826
chr4 352086 0.19% 1079
chr5 523504 0.29% 1626
chr6 514400 0.30% 1628
chr7 510762 0.32% 1531
chr8 470438 0.32% 1387
chr9 613072 0.44% 1731
chr10 687137 0.51% 2003
chr11 686531 0.51% 1979
chr12 463757 0.35% 1411
chr13 227848 0.20% 717
chr14 437275 0.41% 1264
chr15 408179 0.40% 1242
chr16 552968 0.61% 1600
chr17 756218 0.91% 2098
chr18 209979 0.26% 683
chr19 641220 1.09% 1700
chr20 395285 0.61% 1209
chr21 121749 0.26% 393
chr22 404627 0.80% 1123
chrX 103651 0.07% 360
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 35005 150 2566 337.75 290
global segment-length histogram

Files

Filename Size md5
ENCFF706MJS.bed.gz 692.43 KB 0fa4ada98d8d8ebc1a3849d6e4f3749f
ENCFF706MJS.tabix.bed.gz 348.64 KB 3af43c6c17f1db781c0b5ba490954292
ENCFF706MJS.tabix.bed.gz.tbi 183.14 KB 00f88269eae842ea1873f942f1f680bf
genomic_resource.yaml 2.21 KB 5aae318085c8e45807efe08294d916f4
statistics/