Resource

Id Histone_ChIP-seq/ENCSR477ATRcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR477ATR [biosample_summary="Homo sapiens BLaER1 24 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR477ATR
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 24 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:22.231950+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR477ATR
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 24 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR477ATR float

Histone_ChIP-seq_ENCSR477ATR
Histone_ChIP-seq ENCSR477ATR [biosample_summary="Homo sapiens BLaER1 24 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR477ATR [1.38, 32.5]
n
220,035,484
mean
8.76
sd
4.57

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2200354846.84% 170818
chr1 20888873 8.39% 15911
chr1_KI270706v1_random 287 0.16% 1
chr1_KI270712v1_random 949 0.54% 2
chr1_KI270713v1_random 7699 18.90% 10
chr1_KI270714v1_random 250 0.60% 1
chr2 16942582 7.00% 13703
chr3 12070764 6.09% 10055
chr3_GL000221v1_random 2906 1.87% 5
chr4 8084550 4.25% 7027
chr5 10752480 5.92% 8612
chr6 11200317 6.56% 9046
chr7 10792190 6.77% 8796
chr8 10172445 7.01% 7781
chr9 9561614 6.91% 7326
chr9_KI270719v1_random 680 0.38% 2
chr10 11296380 8.44% 8833
chr11 10850113 8.03% 8164
chr11_KI270721v1_random 1915 1.91% 5
chr12 10168711 7.63% 7699
chr13 4958901 4.34% 4310
chr14 7176633 6.70% 5396
chr14_GL000009v2_random 1142 0.57% 3
chr14_GL000194v1_random 2149 1.12% 4
chr14_GL000225v1_random 954 0.45% 1
chr14_KI270723v1_random 551 1.45% 1
chr14_KI270726v1_random 1903 4.35% 4
chr15 7468950 7.32% 5738
chr15_KI270727v1_random 2206 0.49% 7
chr16 9514611 10.53% 6824
chr16_KI270728v1_random 2614 0.14% 4
chr17 12464559 14.97% 8459
chr17_GL000205v2_random 15889 8.56% 10
chr18 4374353 5.44% 3662
chr19 9386620 16.01% 6407
chr20 7521338 11.67% 5713
chr21 3236054 6.93% 2418
chr22 6419279 12.63% 4403
chr22_KI270731v1_random 2174 1.44% 4
chr22_KI270733v1_random 6122 3.41% 9
chr22_KI270734v1_random 1071 0.65% 2
chrUn_GL000195v1 4036 2.21% 6
chrUn_GL000214v1 757 0.55% 2
chrUn_GL000216v2 1368 0.77% 1
chrUn_GL000219v1 9787 5.46% 10
chrUn_GL000220v1 683 0.42% 2
chrUn_GL000224v1 849 0.47% 1
chrUn_KI270438v1 285 0.25% 1
chrUn_KI270442v1 1411 0.36% 1
chrUn_KI270519v1 1298 0.94% 2
chrUn_KI270742v1 381 0.20% 1
chrUn_KI270744v1 5613 3.33% 8
chrUn_KI270751v1 1256 0.83% 2
chrUn_KI270753v1 3337 5.30% 3
chrUn_KI270755v1 350 0.95% 1
chrX 4646254 2.98% 4411
chrY 4041 0.01% 8
3310 contigs with no values (122256361 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 170818 250 39299 1288.13 744
global segment-length histogram

Files

Filename Size md5
ENCFF005PPO.bed.gz 3.66 MB 72a5cd392a9ac118df6a13fba93358f8
ENCFF005PPO.tabix.bed.gz 1.71 MB 89b1459ab8d27798cebdc85db978a11b
ENCFF005PPO.tabix.bed.gz.tbi 385.36 KB 47a8364ec713ef24b67d0f3ea9a2dc11
genomic_resource.yaml 3.12 KB 340e742cea233335c30766c9cbf3f5b3
statistics/