Resource

Id Histone_ChIP-seq/ENCSR475TRZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR475TRZ [biosample_summary="Homo sapiens stomach tissue male adult (54 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR475TRZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue male adult (54 years)
  • date_created: 2017-12-06T21:14:25.249273+00:00
  • date_released: 2019-02-12
  • doi: 10.17989/ENCSR475TRZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR475TRZ float

Histone_ChIP-seq_ENCSR475TRZ
Histone_ChIP-seq ENCSR475TRZ [biosample_summary="Homo sapiens stomach tissue male adult (54 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR475TRZ [1.23, 8.21]
n
7,152,429
mean
3.64
sd
0.954

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 71524290.22% 8595
chr1 328766 0.13% 477
chr1_KI270709v1_random 4618 6.91% 5
chr1_KI270712v1_random 1278 0.73% 2
chr2 302923 0.13% 442
chr2_KI270716v1_random 1274 0.83% 1
chr3 269903 0.14% 377
chr4 328086 0.17% 421
chr4_GL000008v2_random 4212 2.01% 2
chr5 455596 0.25% 555
chr6 204932 0.12% 308
chr7 424917 0.27% 544
chr8 241272 0.17% 354
chr9 219429 0.16% 285
chr9_KI270719v1_random 1989 1.12% 3
chr10 315216 0.24% 409
chr11 215402 0.16% 325
chr12 389531 0.29% 440
chr13 76510 0.07% 118
chr14 132110 0.12% 195
chr14_GL000009v2_random 288 0.14% 1
chr14_GL000194v1_random 494 0.26% 1
chr14_GL000225v1_random 11202 5.30% 17
chr14_KI270722v1_random 4017 2.07% 7
chr14_KI270723v1_random 1414 3.71% 1
chr14_KI270724v1_random 707 1.79% 1
chr15 176066 0.17% 201
chr16 220514 0.24% 261
chr16_KI270728v1_random 986 0.05% 3
chr17 141192 0.17% 173
chr17_KI270729v1_random 17367 6.18% 19
chr17_KI270730v1_random 10459 9.29% 13
chr18 93562 0.12% 137
chr19 1947658 3.32% 1731
chr20 117828 0.18% 169
chr21 176864 0.38% 195
chr22 81203 0.16% 115
chr22_KI270732v1_random 1582 3.81% 2
chr22_KI270733v1_random 4493 2.50% 10
chr22_KI270735v1_random 3547 8.29% 4
chr22_KI270736v1_random 35828 19.69% 34
chr22_KI270738v1_random 2962 2.98% 4
chrM 592 3.57% 1
chrUn_GL000214v1 1955 1.42% 4
chrUn_GL000216v2 26805 15.18% 32
chrUn_GL000218v1 404 0.25% 1
chrUn_GL000219v1 3088 1.72% 4
chrUn_GL000224v1 1189 0.66% 2
chrUn_KI270435v1 2952 3.17% 5
chrUn_KI270438v1 11926 10.60% 18
chrUn_KI270442v1 62401 15.92% 67
chrUn_KI270467v1 1263 32.22% 2
chrUn_KI270507v1 392 7.32% 1
chrUn_KI270512v1 1455 6.41% 1
chrUn_KI270519v1 1946 1.41% 4
chrUn_KI270538v1 1144 1.25% 3
chrUn_KI270589v1 2582 5.81% 2
chrUn_KI270590v1 1377 29.39% 1
chrUn_KI270591v1 1597 27.55% 2
chrUn_KI270744v1 2012 1.19% 2
chrUn_KI270749v1 1971 1.24% 2
chrUn_KI270751v1 1521 1.01% 2
chrUn_KI270754v1 669 1.66% 2
chrUn_KI270756v1 393 0.49% 1
chrUn_KI270757v1 3096 4.35% 4
chrX 29771 0.02% 45
chrY 21731 0.04% 25
3300 contigs with no values (122172349 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 8595 200 17537 832.16 633
global segment-length histogram

Files

Filename Size md5
ENCFF628VZT.bed.gz 176.26 KB a15253f4865f5bc4534a3d14bca5b2cb
ENCFF628VZT.tabix.bed.gz 89.81 KB 209fbef2e916053ec52c212e229cab75
ENCFF628VZT.tabix.bed.gz.tbi 54.35 KB 334034659b33e142c52795e30fa90155
genomic_resource.yaml 1.49 KB 2495fcd79ff4c4bd77c95fe6ac8a403f
statistics/