Resource
| Id | Histone_ChIP-seq/ENCSR461MTO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR461MTO [biosample_summary="Homo sapiens heart left ventricle tissue male adult (73 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN205AML|/analyses/ENCAN205AML/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF230EIS|/files/ENCFF230EIS/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.97. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR461MTO | float |
Histone_ChIP-seq_ENCSR461MTO |
Histone_ChIP-seq ENCSR461MTO [biosample_summary="Homo sapiens heart left ventricle tissue male adult (73 years)" and target="H3K4me1"]
|
 |
[1.6, 9.72] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 70438809 | 2.19% | 80405 |
| chr1 | 7231150 | 2.90% | 8032 |
| chr2 | 5693672 | 2.35% | 6516 |
| chr3 | 5045499 | 2.54% | 5741 |
| chr4 | 2541851 | 1.34% | 3200 |
| chr5 | 3777185 | 2.08% | 4383 |
| chr6 | 3638502 | 2.13% | 4438 |
| chr7 | 3006735 | 1.89% | 3721 |
| chr8 | 2930663 | 2.02% | 3488 |
| chr9 | 3186189 | 2.30% | 3463 |
| chr10 | 4019484 | 3.00% | 4398 |
| chr11 | 3917441 | 2.90% | 4417 |
| chr12 | 3555855 | 2.67% | 3928 |
| chr13 | 1698785 | 1.49% | 2013 |
| chr14 | 2338500 | 2.18% | 2649 |
| chr15 | 2668291 | 2.62% | 2945 |
| chr16 | 2432202 | 2.69% | 2783 |
| chr17 | 3880187 | 4.66% | 4132 |
| chr18 | 1270381 | 1.58% | 1647 |
| chr19 | 2547668 | 4.35% | 2818 |
| chr20 | 2032121 | 3.15% | 2272 |
| chr21 | 664549 | 1.42% | 790 |
| chr22 | 2029744 | 3.99% | 2104 |
| chrX | 330899 | 0.21% | 524 |
| chrY | 1256 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 80405 | 195 | 27298 | 876.05 | 679 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF735CIX.bed.gz | 1.66 MB | 37d2cdb4308375fa8d1674c2a6167b44 |
| ENCFF735CIX.tabix.bed.gz | 827.72 KB | 370381448882cd54e3e010870177b8c5 |
| ENCFF735CIX.tabix.bed.gz.tbi | 244.77 KB | 780c9b540ccc1b42e660d28ca2020edd |
| genomic_resource.yaml | 2.15 KB | 2cf226845c7ffd48fb87f397cb3ea560 |
| statistics/ |