Resource

Id Histone_ChIP-seq/ENCSR454WZXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR454WZX [biosample_summary="Homo sapiens lung tissue female embryo (120 days)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR454WZX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue female embryo (120 days)
  • date_created: 2015-09-15T19:52:12.933681+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR454WZX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment: As of June 22, 2017, this experiment's biosample (and donor) has been changed. A SNP-analysis shows that the original donor (ENCDO308YQF) was incorrect. 10/27/17: Control biosample.summary does not match Experiment (former control: ENCSR724XIL).
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR454WZX float

Histone_ChIP-seq_ENCSR454WZX
Histone_ChIP-seq ENCSR454WZX [biosample_summary="Homo sapiens lung tissue female embryo (120 days)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR454WZX [1.95, 16.9]
n
3,064,835
mean
5.1
sd
1.63

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 30648350.10% 10290
chr1 141162 0.06% 561
chr2 161621 0.07% 597
chr3 119906 0.06% 458
chr4 146254 0.08% 509
chr5 163150 0.09% 586
chr6 93991 0.06% 379
chr7 144522 0.09% 504
chr8 97305 0.07% 351
chr9 113550 0.08% 383
chr10 107032 0.08% 407
chr11 68089 0.05% 287
chr12 156010 0.12% 477
chr13 63918 0.06% 257
chr14 55900 0.05% 240
chr15 87441 0.09% 295
chr16 132911 0.15% 409
chr17 65496 0.08% 228
chr18 45875 0.06% 189
chr19 840150 1.43% 2148
chr20 52338 0.08% 204
chr21 70880 0.15% 249
chr22 37899 0.07% 148
chrX 96291 0.06% 408
chrY 3144 0.01% 16
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 10290 105 4159 297.85 236
global segment-length histogram

Files

Filename Size md5
ENCFF009PAY.bed.gz 185.34 KB 5acbee7b435cda70469c3068c5c0600a
ENCFF009PAY.tabix.bed.gz 97.66 KB 623b9e500247c0c6583dcbdc70ecc10c
ENCFF009PAY.tabix.bed.gz.tbi 60.69 KB 05354c099b22e2b46a13358354b5cf73
genomic_resource.yaml 2.46 KB fb8053b0140b77666839e38a3bdbf14d
statistics/