Resource

Id Histone_ChIP-seq/ENCSR454VRAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR454VRA [biosample_summary="Homo sapiens small intestine tissue male child (3 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR454VRA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002108/
  • biosample_summary: Homo sapiens small intestine tissue male child (3 years)
  • date_created: 2015-10-01T07:16:45.664631+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR454VRA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male child (3 years)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR454VRA float

Histone_ChIP-seq_ENCSR454VRA
Histone_ChIP-seq ENCSR454VRA [biosample_summary="Homo sapiens small intestine tissue male child (3 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR454VRA [1.73, 82.3]
n
66,274,040
mean
13.1
sd
10.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 662740402.06% 101104
chr1 6868676 2.76% 10054
chr1_KI270713v1_random 461 1.13% 2
chr2 4896143 2.02% 7724
chr3 3691105 1.86% 6074
chr4 2102787 1.11% 3573
chr5 3074479 1.69% 4826
chr6 3546117 2.08% 5820
chr7 2760151 1.73% 4446
chr8 2424192 1.67% 4063
chr9 2894446 2.09% 4386
chr10 3200797 2.39% 4973
chr11 3777714 2.80% 5337
chr12 3212890 2.41% 4820
chr13 1298560 1.14% 2146
chr14 2443655 2.28% 3596
chr15 2234444 2.19% 3414
chr16 2800215 3.10% 4123
chr17 4229225 5.08% 5777
chr17_GL000205v2_random 903 0.49% 2
chr18 1116057 1.39% 1921
chr19 3380433 5.77% 4461
chr20 2002905 3.11% 2972
chr21 890808 1.91% 1367
chr22 1900059 3.74% 2658
chrUn_GL000219v1 952 0.53% 2
chrUn_GL000220v1 136 0.08% 1
chrX 1488001 0.95% 2512
chrY 37729 0.07% 54
3338 contigs with no values (128509749 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101104 130 11552 655.5 435
global segment-length histogram

Files

Filename Size md5
ENCFF581EXO.bed.gz 2.35 MB 6aa5c189d28a8cd90d6001d084267036
ENCFF581EXO.tabix.bed.gz 1.04 MB 3ddd7083bc28dcbdb809ac4a98ef85bb
ENCFF581EXO.tabix.bed.gz.tbi 257.23 KB a605b76dd7745ffd541da3292e76f24e
genomic_resource.yaml 1.51 KB 3803e72cd9c85d2f4287170e742c7bd5
statistics/