Resource

Id Histone_ChIP-seq/ENCSR453XEYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR453XEY [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR453XEY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000427/
  • biosample_summary: Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence
  • date_created: 2015-09-15T20:27:17.533711+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR453XEY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (17 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR453XEY float

Histone_ChIP-seq_ENCSR453XEY
Histone_ChIP-seq ENCSR453XEY [biosample_summary="Homo sapiens neurosphere female embryo (17 weeks) originated from ganglionic eminence" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR453XEY [1.89, 10.8]
n
65,278,700
mean
4.63
sd
1.24

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 652787002.03% 111179
chr1 6709556 2.70% 10897
chr2 5247508 2.17% 9158
chr3 4271905 2.15% 7427
chr4 2698480 1.42% 5041
chr5 3637587 2.00% 6282
chr6 3516558 2.06% 6338
chr7 3144249 1.97% 5659
chr8 2873653 1.98% 5044
chr9 2987122 2.16% 4967
chr10 3175055 2.37% 5351
chr11 4099189 3.03% 6708
chr12 3006134 2.26% 5176
chr13 1639730 1.43% 2922
chr14 2329010 2.18% 3986
chr15 2326592 2.28% 3853
chr16 2227720 2.47% 3608
chr17 3559004 4.27% 5449
chr18 1479074 1.84% 2629
chr19 1999099 3.41% 3309
chr20 1857257 2.88% 2994
chr21 614526 1.32% 1080
chr22 1503027 2.96% 2353
chrX 376665 0.24% 948
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 111179 185 8694 587.15 453
global segment-length histogram

Files

Filename Size md5
ENCFF724ZWJ.bed.gz 1.91 MB 060015eb4bda88c5478558648503943c
ENCFF724ZWJ.tabix.bed.gz 1.03 MB 4cc771e5ad3d7dcd76529f1f0086d81c
ENCFF724ZWJ.tabix.bed.gz.tbi 360.94 KB 40fbbb134cf21595ec35069ff6f8f497
genomic_resource.yaml 2.1 KB 66837ab957de1d3847a4e2a08a81b5df
statistics/