Resource
| Id | Histone_ChIP-seq/ENCSR449FFA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR449FFA [biosample_summary="Homo sapiens chorion tissue female embryo (40 weeks)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (40 weeks) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN574DKT|/analyses/ENCAN574DKT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF373DNM|/files/ENCFF373DNM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 21480787 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR449FFA | float |
Histone_ChIP-seq_ENCSR449FFA |
Histone_ChIP-seq ENCSR449FFA [biosample_summary="Homo sapiens chorion tissue female embryo (40 weeks)" and target="H3K36me3"]
|
 |
[1.36, 56.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 47639088 | 1.48% | 65103 |
| chr1 | 4586042 | 1.84% | 6414 |
| chr1_KI270711v1_random | 1053 | 2.49% | 1 |
| chr2 | 2837358 | 1.17% | 4450 |
| chr3 | 2427154 | 1.22% | 3676 |
| chr4 | 1416635 | 0.74% | 2258 |
| chr5 | 1951113 | 1.07% | 3000 |
| chr6 | 1735508 | 1.02% | 2629 |
| chr7 | 2283391 | 1.43% | 3207 |
| chr8 | 1394076 | 0.96% | 2064 |
| chr9 | 2342426 | 1.69% | 2975 |
| chr9_KI270720v1_random | 238 | 0.61% | 1 |
| chr10 | 1824825 | 1.36% | 2755 |
| chr11 | 2485797 | 1.84% | 3263 |
| chr12 | 2729452 | 2.05% | 3609 |
| chr13 | 756877 | 0.66% | 1283 |
| chr14 | 1566933 | 1.46% | 2337 |
| chr14_GL000194v1_random | 594 | 0.31% | 1 |
| chr15 | 1550545 | 1.52% | 2350 |
| chr16 | 2673651 | 2.96% | 3192 |
| chr17 | 3331559 | 4.00% | 4101 |
| chr18 | 567738 | 0.71% | 914 |
| chr19 | 4902366 | 8.36% | 5163 |
| chr20 | 1501534 | 2.33% | 1940 |
| chr21 | 572086 | 1.22% | 780 |
| chr22 | 1714470 | 3.37% | 1947 |
| chrUn_GL000218v1 | 352 | 0.22% | 1 |
| chrUn_GL000219v1 | 1989 | 1.11% | 5 |
| chrUn_KI270466v1 | 381 | 30.90% | 1 |
| chrUn_KI270467v1 | 804 | 20.51% | 1 |
| chrX | 481841 | 0.31% | 784 |
| chrY | 300 | <0.01% | 1 |
| 3335 contigs with no values (128458858 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 65103 | 190 | 14032 | 731.75 | 542 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF664EZS.bed.gz | 1.23 MB | cc7c1ed7bce2523b6d215454abed44fa |
| ENCFF664EZS.tabix.bed.gz | 637.86 KB | d04de037dd071259af76882588238d64 |
| ENCFF664EZS.tabix.bed.gz.tbi | 144.29 KB | 594cbc4496e5e196ab96aaad9323b425 |
| genomic_resource.yaml | 2.0 KB | dbccb486d211dd8366bea837da2d4bb5 |
| statistics/ |