Resource
| Id | Histone_ChIP-seq/ENCSR449EBF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR449EBF [biosample_summary="Homo sapiens muscle of leg tissue female embryo (110 days)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (110 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN008XIX|/analyses/ENCAN008XIX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN008XIX|/analyses/ENCAN008XIX/} has in progress subobject document {63ee2e0c-e10f-4c2f-a241-243a7756c415|/documents/63ee2e0c-e10f-4c2f-a241-243a7756c415/} audit_not_compliant: Processed alignments file {ENCFF350MQP|/files/ENCFF350MQP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 30633937 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR449EBF | float |
Histone_ChIP-seq_ENCSR449EBF |
Histone_ChIP-seq ENCSR449EBF [biosample_summary="Homo sapiens muscle of leg tissue female embryo (110 days)" and target="H3K4me1"]
|
 |
[1.82, 33.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 114490217 | 3.56% | 181936 |
| chr1 | 11551321 | 4.64% | 17434 |
| chr2 | 9213112 | 3.80% | 15449 |
| chr3 | 6331148 | 3.19% | 11108 |
| chr4 | 3401797 | 1.79% | 6636 |
| chr5 | 5233192 | 2.88% | 9409 |
| chr6 | 5253868 | 3.08% | 9873 |
| chr7 | 5104383 | 3.20% | 8484 |
| chr8 | 4358883 | 3.00% | 7796 |
| chr9 | 5655648 | 4.09% | 8535 |
| chr10 | 6528122 | 4.88% | 10360 |
| chr11 | 7169377 | 5.31% | 10391 |
| chr12 | 5043107 | 3.78% | 8030 |
| chr13 | 2270265 | 1.99% | 4432 |
| chr14 | 3961200 | 3.70% | 5849 |
| chr15 | 4162160 | 4.08% | 6706 |
| chr16 | 4850923 | 5.37% | 6576 |
| chr17 | 7145532 | 8.58% | 9194 |
| chr18 | 2136346 | 2.66% | 3887 |
| chr19 | 4808571 | 8.20% | 6324 |
| chr20 | 3885563 | 6.03% | 5771 |
| chr21 | 1391494 | 2.98% | 2230 |
| chr22 | 3503986 | 6.90% | 4510 |
| chrX | 1530219 | 0.98% | 2952 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 181936 | 150 | 23060 | 629.29 | 424 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF170ZFK.bed.gz | 3.45 MB | d21740e067ba5f851374933a9c8d6b12 |
| ENCFF170ZFK.tabix.bed.gz | 1.72 MB | 12e1dd351283686a23fdd289ce54a92d |
| ENCFF170ZFK.tabix.bed.gz.tbi | 371.61 KB | 6ca8a78361fe5448165bdc63981d2020 |
| genomic_resource.yaml | 2.22 KB | c319832b6c990024281b2023deb7866b |
| statistics/ |