Resource

Id Histone_ChIP-seq/ENCSR449AUDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR449AUD [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR449AUD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease; dorsolateral prefrontal cortex tissue female adult (89 years)
  • date_created: 2021-04-30T04:18:05.722319+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR449AUD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (89 years) with Alzheimer's disease
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR449AUD float

Histone_ChIP-seq_ENCSR449AUD
Histone_ChIP-seq ENCSR449AUD [biosample_summary="Homo sapiens with Alzheimer''s disease; dorsolateral prefrontal cortex tissue female adult (89 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR449AUD [1.74, 41]
n
85,074,606
mean
7.51
sd
4.55

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 850746062.64% 66010
chr1 8677808 3.49% 6491
chr2 6221291 2.57% 4964
chr3 5096138 2.57% 4048
chr4 3464421 1.82% 2747
chr5 4566633 2.52% 3559
chr6 4488310 2.63% 3398
chr7 3881997 2.44% 3210
chr8 3455336 2.38% 2723
chr9 4070926 2.94% 3094
chr10 4427674 3.31% 3260
chr11 5206605 3.85% 3849
chr12 4392080 3.30% 3501
chr13 2010513 1.76% 1567
chr14 2922866 2.73% 2179
chr15 2922228 2.87% 2246
chr16 2915373 3.23% 2355
chr17 4705528 5.65% 3523
chr18 1692200 2.11% 1346
chr19 3509920 5.99% 2763
chr20 2406344 3.73% 1842
chr21 931411 1.99% 739
chr22 2023746 3.98% 1559
chrX 1085258 0.70% 1047
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 66010 225 47404 1288.81 890
global segment-length histogram

Files

Filename Size md5
ENCFF693JGW.bed.gz 1.4 MB c97ef74398f8dcfda8252bdac0936fd0
ENCFF693JGW.tabix.bed.gz 687.25 KB 5ece88fa6c7f5c68a4c5e09ba1bd201a
ENCFF693JGW.tabix.bed.gz.tbi 231.28 KB e7d2aed03c7f09ab8073618bdab9a32b
genomic_resource.yaml 1.7 KB 2b0753636e1e609da803289b0f93f2ca
statistics/