Resource

Id Histone_ChIP-seq/ENCSR448FZCcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR448FZC [biosample_summary="Homo sapiens spleen tissue male child (3 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR448FZC
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002106/
  • biosample_summary: Homo sapiens spleen tissue male child (3 years)
  • date_created: 2015-10-01T07:17:21.893571+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR448FZC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male child (3 years)
  • status: released
  • submitter_comment: An error has been identified on one more protocol documents in this experiment regarding the antibody specifications. Please refer to the external references for the correct information.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR448FZC float

Histone_ChIP-seq_ENCSR448FZC
Histone_ChIP-seq ENCSR448FZC [biosample_summary="Homo sapiens spleen tissue male child (3 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR448FZC [1.9, 50.6]
n
25,859,295
mean
18.8
sd
9.02

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 258592950.80% 20390
chr1 2540530 1.02% 2047
chr2 1750300 0.72% 1358
chr3 1393386 0.70% 1072
chr4 974157 0.51% 731
chr5 1188792 0.65% 945
chr6 1482590 0.87% 1162
chr7 1250289 0.78% 1028
chr8 928296 0.64% 720
chr9 1076621 0.78% 840
chr10 1086856 0.81% 833
chr11 1431174 1.06% 1108
chr12 1298803 0.97% 1020
chr13 498139 0.44% 382
chr14 853976 0.80% 678
chr15 845613 0.83% 663
chr16 1050289 1.16% 789
chr17 1602631 1.92% 1255
chr18 425553 0.53% 316
chr19 1835298 3.13% 1538
chr20 685043 1.06% 530
chr21 245568 0.53% 194
chr22 620288 1.22% 479
chrX 768269 0.49% 683
chrY 26834 0.05% 19
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 20390 215 9574 1268.23 1181
global segment-length histogram

Files

Filename Size md5
ENCFF441DWZ.bed.gz 527.06 KB 8e2f62a1aa765c6cfd1bba234b4edab2
ENCFF441DWZ.tabix.bed.gz 237.96 KB dc5f1c71bff91db3b6ce5a790b6090f3
ENCFF441DWZ.tabix.bed.gz.tbi 135.68 KB 589a4c7eeb37f2b8fb40564b596b0454
genomic_resource.yaml 1.88 KB b3a97f4d5b10480e5e9dd1656112f63d
statistics/