Resource

Id Histone_ChIP-seq/ENCSR443SLYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR443SLY [biosample_summary="Homo sapiens peripheral blood mononuclear cell male adult (27 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR443SLY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_2000001/
  • biosample_summary: Homo sapiens peripheral blood mononuclear cell male adult (27 years)
  • date_created: 2015-09-15T20:26:54.181670+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR443SLY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (27 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR443SLY float

Histone_ChIP-seq_ENCSR443SLY
Histone_ChIP-seq ENCSR443SLY [biosample_summary="Homo sapiens peripheral blood mononuclear cell male adult (27 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR443SLY [1.45, 30.5]
n
6,844,035
mean
4.2
sd
1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 68440350.21% 22007
chr1 612357 0.25% 1952
chr1_KI270709v1_random 395 0.59% 1
chr1_KI270712v1_random 1088 0.62% 2
chr1_KI270713v1_random 251 0.62% 1
chr2 459067 0.19% 1518
chr3 351634 0.18% 1156
chr4 317164 0.17% 1033
chr5 302784 0.17% 993
chr6 279355 0.16% 967
chr7 396670 0.25% 1292
chr8 317052 0.22% 1004
chr9 342822 0.25% 1050
chr9_KI270719v1_random 1238 0.70% 2
chr10 312839 0.23% 1030
chr11 377876 0.28% 1197
chr12 277364 0.21% 913
chr13 153047 0.13% 530
chr14 218188 0.20% 714
chr15 196622 0.19% 651
chr16 348776 0.39% 1063
chr16_KI270728v1_random 321 0.02% 1
chr17 397190 0.48% 1236
chr17_GL000205v2_random 183 0.10% 1
chr18 130493 0.16% 455
chr19 408743 0.70% 1242
chr20 215761 0.33% 674
chr21 111278 0.24% 340
chr22 243491 0.48% 746
chr22_KI270733v1_random 1813 1.01% 5
chr22_KI270734v1_random 185 0.11% 1
chrM 4516 27.26% 11
chrUn_GL000214v1 295 0.21% 1
chrUn_GL000220v1 206 0.13% 1
chrUn_KI270442v1 2346 0.60% 6
chrUn_KI270512v1 306 1.35% 1
chrX 57348 0.04% 206
chrY 2971 0.01% 11
3329 contigs with no values (125482581 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22007 180 1487 310.99 276
global segment-length histogram

Files

Filename Size md5
ENCFF537XNQ.bed.gz 365.18 KB 1622ae625fc360ff535c57801f1ef120
ENCFF537XNQ.tabix.bed.gz 200.22 KB 73ecd9f146de33c420dccd0e351bab9d
ENCFF537XNQ.tabix.bed.gz.tbi 152.65 KB 0e724c5f3e844bb065712047834bc8d2
genomic_resource.yaml 2.04 KB c7aff59e1fa62c7b9b4978c244034610
statistics/