Resource
| Id | Histone_ChIP-seq/ENCSR443NEP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR443NEP [biosample_summary="Homo sapiens cingulate gyrus tissue male adult (81 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (81 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN260RXW|/analyses/ENCAN260RXW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF447HPJ|/files/ENCFF447HPJ/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 32392859 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR443NEP | float |
Histone_ChIP-seq_ENCSR443NEP |
Histone_ChIP-seq ENCSR443NEP [biosample_summary="Homo sapiens cingulate gyrus tissue male adult (81 years)" and target="H3K4me1"]
|
 |
[1.71, 19.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 102673016 | 3.19% | 114480 |
| chr1 | 10498187 | 4.22% | 11212 |
| chr2 | 7998317 | 3.30% | 9063 |
| chr3 | 6294613 | 3.17% | 7395 |
| chr4 | 4171282 | 2.19% | 5047 |
| chr5 | 5579210 | 3.07% | 6502 |
| chr6 | 5702102 | 3.34% | 6632 |
| chr7 | 4996279 | 3.14% | 5889 |
| chr8 | 4010950 | 2.76% | 4782 |
| chr9 | 5258389 | 3.80% | 5609 |
| chr10 | 5696678 | 4.26% | 5955 |
| chr11 | 6412308 | 4.75% | 6635 |
| chr12 | 4478712 | 3.36% | 5114 |
| chr13 | 2478735 | 2.17% | 2986 |
| chr14 | 3564684 | 3.33% | 3926 |
| chr15 | 3741283 | 3.67% | 4125 |
| chr16 | 3605287 | 3.99% | 3919 |
| chr17 | 5248338 | 6.30% | 5402 |
| chr18 | 2175213 | 2.71% | 2574 |
| chr19 | 3362208 | 5.74% | 3560 |
| chr20 | 3053905 | 4.74% | 3205 |
| chr21 | 1056729 | 2.26% | 1250 |
| chr22 | 2297104 | 4.52% | 2312 |
| chrX | 967817 | 0.62% | 1348 |
| chrY | 24686 | 0.04% | 38 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 114480 | 230 | 17336 | 896.86 | 683 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF040KUL.bed.gz | 2.37 MB | 273d5b0045435d8e073eeada4e6610cc |
| ENCFF040KUL.tabix.bed.gz | 1.14 MB | 6765cff6fe0ab02e489582ceebf738ca |
| ENCFF040KUL.tabix.bed.gz.tbi | 319.39 KB | c57bd8f3470f3f47f050ef118bbc730a |
| genomic_resource.yaml | 2.01 KB | 34042202207cf45609f93adf4952a01f |
| statistics/ |