Resource

Id Histone_ChIP-seq/ENCSR442DGEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR442DGE [biosample_summary="Homo sapiens H1" and target="H3K79me1"]
Description
Labels
  • accession: ENCSR442DGE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003042/
  • biosample_summary: Homo sapiens H1
  • date_created: 2015-10-01T07:16:11.339607+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR442DGE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Additional reads were identified for replicate 1 after the processing was done. We made reprocessing a low priority.
  • target: H3K79me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR442DGE float

Histone_ChIP-seq_ENCSR442DGE

Histone_ChIP-seq ENCSR442DGE [biosample_summary="Homo sapiens H1" and target="H3K79me1"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR442DGE [1.85, 16.6]
n
13,431,960
mean
4.43
sd
1.06

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 134319600.42% 38618
chr1 1250815 0.50% 3598
chr2 953161 0.39% 2757
chr3 678799 0.34% 2035
chr4 389259 0.20% 1190
chr5 546494 0.30% 1596
chr6 610644 0.36% 1876
chr7 676305 0.42% 2043
chr8 548522 0.38% 1595
chr9 685581 0.50% 1951
chr10 611426 0.46% 1759
chr11 638739 0.47% 1850
chr12 531448 0.40% 1599
chr13 295059 0.26% 858
chr14 446458 0.42% 1302
chr15 424091 0.42% 1225
chr16 775228 0.86% 2138
chr17 779021 0.94% 2160
chr18 218902 0.27% 687
chr19 1057386 1.80% 2726
chr20 489615 0.76% 1375
chr21 169446 0.36% 488
chr22 589487 1.16% 1613
chrX 64285 0.04% 189
chrY 1789 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 38618 168 2324 347.82 296
global segment-length histogram

Files

Filename Size md5
ENCFF088PTH.bed.gz 713.99 KB 871a24d2369a317e1b1d31f7bae960fe
ENCFF088PTH.tabix.bed.gz 372.78 KB 38d0cf751da03ab797a3febca8849416
ENCFF088PTH.tabix.bed.gz.tbi 130.59 KB 0ae629319027669a0d86434aeafa3399
genomic_resource.yaml 2.71 KB b3b41b8af6776bcd1c21f6111adfe5d8
statistics/