Resource

Id Histone_ChIP-seq/ENCSR441JWFcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR441JWF [biosample_summary="Homo sapiens PC-9" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR441JWF
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002847/
  • biosample_summary: Homo sapiens PC-9
  • date_created: 2014-10-24T16:20:48.266277+00:00
  • date_released: 2016-05-06
  • doi: 10.17989/ENCSR441JWF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR441JWF float

Histone_ChIP-seq_ENCSR441JWF
Histone_ChIP-seq ENCSR441JWF [biosample_summary="Homo sapiens PC-9" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR441JWF [1.36, 28.8]
n
51,079,166
mean
12.5
sd
5.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 510791661.59% 33540
chr1 5202586 2.09% 3338
chr1_KI270706v1_random 351 0.20% 1
chr1_KI270713v1_random 1449 3.56% 4
chr2 3799956 1.57% 2566
chr3 3021710 1.52% 1957
chr4 1937016 1.02% 1251
chr4_GL000008v2_random 311 0.15% 1
chr5 2426468 1.34% 1589
chr6 3220024 1.89% 2029
chr7 2555981 1.60% 1797
chr8 1955077 1.35% 1319
chr9 2009106 1.45% 1343
chr10 2102984 1.57% 1389
chr11 2749551 2.04% 1722
chr12 2723971 2.04% 1700
chr13 1087174 0.95% 725
chr14 1637235 1.53% 1037
chr14_GL000009v2_random 724 0.36% 2
chr14_GL000194v1_random 1166 0.61% 2
chr15 1510531 1.48% 980
chr16 1902765 2.11% 1258
chr17 2745916 3.30% 1742
chr17_GL000205v2_random 3456 1.86% 3
chr17_KI270729v1_random 2203 0.78% 2
chr18 902220 1.12% 642
chr19 3085479 5.26% 2119
chr20 1471659 2.28% 966
chr21 459457 0.98% 316
chr22 1114926 2.19% 765
chr22_KI270733v1_random 699 0.39% 2
chrM 4189 25.28% 5
chrUn_GL000195v1 1180 0.65% 3
chrUn_GL000219v1 2361 1.32% 2
chrUn_KI270337v1 462 41.21% 1
chrUn_KI270438v1 3663 3.26% 7
chrUn_KI270442v1 576 0.15% 1
chrUn_KI270467v1 1189 30.33% 2
chrUn_KI270743v1 1175 0.56% 1
chrX 1432220 0.92% 951
3327 contigs with no values (183740683 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 33540 221 23813 1522.93 1069
global segment-length histogram

Files

Filename Size md5
ENCFF755EKI.bed.gz 930.68 KB b3d5ff77165caaa92a8ff9c9047319a9
ENCFF755EKI.tabix.bed.gz 388.34 KB 2bca19e82bf2f44dcc5f18dbb1a5a6e0
ENCFF755EKI.tabix.bed.gz.tbi 180.9 KB 6b09dfeb73e029e1e2932fa776436745
genomic_resource.yaml 1.36 KB d7bc00fdb75c1e10c6db9f5817e73170
statistics/