Resource
| Id | Histone_ChIP-seq/ENCSR438SPO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR438SPO [biosample_summary="Homo sapiens kidney tissue male adult (50 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (50 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN438JVS|/analyses/ENCAN438JVS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF155UTY|/files/ENCFF155UTY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 15982424 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR438SPO | float |
Histone_ChIP-seq_ENCSR438SPO |
Histone_ChIP-seq ENCSR438SPO [biosample_summary="Homo sapiens kidney tissue male adult (50 years)" and target="H3K27ac"]
|
 |
[1.96, 64] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 47351672 | 1.47% | 58904 |
| chr1 | 5004855 | 2.01% | 6050 |
| chr2 | 3543042 | 1.46% | 4477 |
| chr3 | 2744176 | 1.38% | 3550 |
| chr4 | 1871007 | 0.98% | 2418 |
| chr5 | 2218490 | 1.22% | 2818 |
| chr6 | 2478277 | 1.45% | 3199 |
| chr7 | 2069856 | 1.30% | 2627 |
| chr8 | 1695898 | 1.17% | 2217 |
| chr9 | 2258232 | 1.63% | 2851 |
| chr10 | 2293233 | 1.71% | 2832 |
| chr11 | 2586991 | 1.92% | 3175 |
| chr12 | 2450790 | 1.84% | 2936 |
| chr13 | 1039956 | 0.91% | 1387 |
| chr14 | 1568236 | 1.47% | 1966 |
| chr15 | 1588149 | 1.56% | 2009 |
| chr16 | 1923312 | 2.13% | 2395 |
| chr17 | 2941819 | 3.53% | 3351 |
| chr18 | 893783 | 1.11% | 1161 |
| chr19 | 2252013 | 3.84% | 2593 |
| chr20 | 1270604 | 1.97% | 1553 |
| chr21 | 566012 | 1.21% | 711 |
| chr22 | 1251917 | 2.46% | 1471 |
| chrX | 806148 | 0.52% | 1111 |
| chrY | 34876 | 0.06% | 46 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 58904 | 175 | 13907 | 803.88 | 567 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF418XDA.bed.gz | 1.29 MB | 8a9d5b06701be19a013a5c14a939eb79 |
| ENCFF418XDA.tabix.bed.gz | 612.56 KB | f1c7c3d1f1b84786270367d7b58f9676 |
| ENCFF418XDA.tabix.bed.gz.tbi | 201.79 KB | 70cf39c264f2efce53dcd3256f594537 |
| genomic_resource.yaml | 1.98 KB | 339fc982d9da5daa8e01a6561d4a9263 |
| statistics/ |