Resource

Id Histone_ChIP-seq/ENCSR438QZNcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR438QZN [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR438QZN
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002084/
  • biosample_summary: Homo sapiens heart left ventricle tissue female adult (53 years)
  • date_created: 2016-10-19T23:00:43.907823+00:00
  • date_released: 2016-11-03
  • doi: 10.17989/ENCSR438QZN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR438QZN float

Histone_ChIP-seq_ENCSR438QZN
Histone_ChIP-seq ENCSR438QZN [biosample_summary="Homo sapiens heart left ventricle tissue female adult (53 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR438QZN [1.64, 9.8]
n
56,972,047
mean
3.68
sd
0.895

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 569720471.77% 58212
chr1 5821581 2.34% 5861
chr2 4304333 1.78% 4429
chr3 3957293 2.00% 4076
chr4 1886826 0.99% 2123
chr5 2940728 1.62% 3138
chr6 2904320 1.70% 3180
chr7 2407456 1.51% 2651
chr8 2281926 1.57% 2459
chr9 2654863 1.92% 2533
chr10 3263684 2.44% 3115
chr11 3186441 2.36% 3162
chr12 2968000 2.23% 2882
chr13 1233600 1.08% 1322
chr14 1879277 1.76% 1921
chr15 2093869 2.05% 2104
chr16 2087171 2.31% 2133
chr17 3415779 4.10% 3217
chr18 950433 1.18% 1085
chr19 2554554 4.36% 2503
chr20 1692482 2.63% 1729
chr21 517094 1.11% 578
chr22 1694620 3.33% 1645
chrM 13505 81.51% 6
chrUn_GL000219v1 5241 2.92% 7
chrUn_KI270438v1 1114 0.99% 2
chrUn_KI270466v1 903 73.24% 2
chrUn_KI270467v1 1598 40.77% 1
chrX 253356 0.16% 348
3338 contigs with no values (185991075 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 58212 240 27221 978.7 773
global segment-length histogram

Files

Filename Size md5
ENCFF882JWG.bed.gz 1.22 MB c909257f6a4b1915d7e1ff2fd06afdde
ENCFF882JWG.tabix.bed.gz 608.28 KB b0a2fd22c93d453d66e8fbf4d7ab358b
ENCFF882JWG.tabix.bed.gz.tbi 204.73 KB f6531ae612a96271ec8801060ca79baa
genomic_resource.yaml 1.54 KB e3f2dd39cf837de817f9ada228ec2cb0
statistics/