Resource

Id Histone_ChIP-seq/ENCSR438BEXcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR438BEX [biosample_summary="Homo sapiens mucosa of stomach tissue male adult (59 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR438BEX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001199/
  • biosample_summary: Homo sapiens mucosa of stomach tissue male adult (59 years)
  • date_created: 2015-09-15T19:51:58.758739+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR438BEX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (59 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR438BEX float

Histone_ChIP-seq_ENCSR438BEX
Histone_ChIP-seq ENCSR438BEX [biosample_summary="Homo sapiens mucosa of stomach tissue male adult (59 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR438BEX [1.89, 24.5]
n
24,858,258
mean
7.16
sd
2.54

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 248582580.77% 22969
chr1 2565224 1.03% 2298
chr2 1736589 0.72% 1566
chr3 1467163 0.74% 1308
chr4 1009091 0.53% 908
chr5 1175334 0.65% 1025
chr6 1520607 0.89% 1336
chr7 1121844 0.70% 1070
chr8 899847 0.62% 868
chr9 1034496 0.75% 950
chr10 1050761 0.79% 956
chr11 1390210 1.03% 1245
chr12 1322787 0.99% 1181
chr13 513360 0.45% 472
chr14 851774 0.80% 773
chr15 806747 0.79% 752
chr16 967418 1.07% 943
chr17 1452356 1.74% 1384
chr18 389312 0.48% 374
chr19 1640876 2.80% 1583
chr20 638266 0.99% 608
chr21 248064 0.53% 242
chr22 536964 1.06% 533
chrX 495878 0.32% 567
chrY 23290 0.04% 27
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22969 270 8084 1082.25 912
global segment-length histogram

Files

Filename Size md5
ENCFF914KDT.bed.gz 534.59 KB e2e6bba73ae4dcf2dd0be9bf2e785eac
ENCFF914KDT.tabix.bed.gz 248.81 KB f06da4c46389ef13b5fd7ddebda55070
ENCFF914KDT.tabix.bed.gz.tbi 132.69 KB 86a3502ee8a7f663d162595567b67c5f
genomic_resource.yaml 1.52 KB 11f541bcd476d8462f970b9d185c3969
statistics/