Resource
| Id | Histone_ChIP-seq/ENCSR437ORF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR437ORF [biosample_summary="Homo sapiens IMR-90" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN821FEL|/analyses/ENCAN821FEL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN821FEL|/analyses/ENCAN821FEL/} has in progress subobject document {fb06a296-6a69-4e12-9ff4-b3ad9e338c48|/documents/fb06a296-6a69-4e12-9ff4-b3ad9e338c48/} audit_not_compliant: Processed alignments file {ENCFF994SJM|/files/ENCFF994SJM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 20566164 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF197BAZ|/files/ENCFF197BAZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11402414 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR437ORF | float |
Histone_ChIP-seq_ENCSR437ORF |
Histone_ChIP-seq ENCSR437ORF [biosample_summary="Homo sapiens IMR-90" and target="H3K36me3"]
|
 |
[1.69, 28] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 83213498 | 2.59% | 222065 |
| chr1 | 7727778 | 3.10% | 21107 |
| chr2 | 6124898 | 2.53% | 17986 |
| chr3 | 4626241 | 2.33% | 13404 |
| chr4 | 2864528 | 1.51% | 8681 |
| chr5 | 4045317 | 2.23% | 11610 |
| chr6 | 3508787 | 2.05% | 10203 |
| chr7 | 4100168 | 2.57% | 11076 |
| chr8 | 2881816 | 1.99% | 8209 |
| chr9 | 3971353 | 2.87% | 9981 |
| chr10 | 3534972 | 2.64% | 9893 |
| chr11 | 4332264 | 3.21% | 10981 |
| chr12 | 4476713 | 3.36% | 11991 |
| chr13 | 1775070 | 1.55% | 5339 |
| chr14 | 2721538 | 2.54% | 7577 |
| chr15 | 3049675 | 2.99% | 8540 |
| chr16 | 4174653 | 4.62% | 9566 |
| chr17 | 5071802 | 6.09% | 12278 |
| chr18 | 1293753 | 1.61% | 3981 |
| chr19 | 5679281 | 9.69% | 11764 |
| chr20 | 2577957 | 4.00% | 6339 |
| chr21 | 1048780 | 2.25% | 2585 |
| chr22 | 2542475 | 5.00% | 5472 |
| chrX | 1083679 | 0.69% | 3502 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 222065 | 118 | 20086 | 374.73 | 266 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF449ADN.bed.gz | 4.65 MB | a4b7b35136a2f7fb82afb581d2688afc |
| ENCFF449ADN.tabix.bed.gz | 2.14 MB | 4cb7afb1b00094e387f4cfe83580a23b |
| ENCFF449ADN.tabix.bed.gz.tbi | 212.02 KB | 8b5f89124dd241ad0c19db32645fc249 |
| genomic_resource.yaml | 2.61 KB | 8f8570eb73e0e88dd8528cac1bb57edf |
| statistics/ |