Resource

Id Histone_ChIP-seq/ENCSR434NUAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR434NUA [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR434NUA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0001226/
  • biosample_summary: Homo sapiens parathyroid adenoma tissue male adult (62 years)
  • date_created: 2014-02-20T05:41:48.262637+00:00
  • date_released: 2017-12-01
  • doi: 10.17989/ENCSR434NUA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (62 years)
  • status: released
  • submitter_comment: Read – level (FASTQ and BAM files) data will be shared with collaborating investigators who are funded by the NHGRI ENCODE project. The data will be made available using a password protected system maintained by the ENCODE data coordination center at Stanford University (https://www.encodeproject.org/), and will be clearly identified as protected human subject data. The read level data will never be released to the general scientific community nor to the general public.
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR434NUA float

Histone_ChIP-seq_ENCSR434NUA
Histone_ChIP-seq ENCSR434NUA [biosample_summary="Homo sapiens parathyroid adenoma tissue male adult (62 years)" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR434NUA [1.69, 10.9]
n
34,469,799
mean
3.98
sd
1.11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 344697991.07% 71336
chr1 3826416 1.54% 7804
chr2 2640786 1.09% 5532
chr3 2262918 1.14% 4754
chr4 1430782 0.75% 3115
chr5 2066689 1.14% 4115
chr6 2144756 1.26% 4414
chr7 1335714 0.84% 2871
chr8 1559099 1.07% 3266
chr9 1747745 1.26% 3448
chr10 2112678 1.58% 4176
chr11 811981 0.60% 1909
chr12 2000688 1.50% 4057
chr13 800241 0.70% 1736
chr14 1307463 1.22% 2606
chr15 755120 0.74% 1771
chr16 1240655 1.37% 2596
chr17 1809423 2.17% 3681
chr18 729973 0.91% 1503
chr19 1205774 2.06% 2604
chr20 1193231 1.85% 2316
chr21 299049 0.64% 627
chr22 918926 1.81% 1759
chrX 263023 0.17% 655
chrY 6669 0.01% 21
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71336 165 6555 483.2 366
global segment-length histogram

Files

Filename Size md5
ENCFF474UII.bed.gz 1.41 MB 28fbd5870f1a50dc088bf845250626af
ENCFF474UII.tabix.bed.gz 719.11 KB fa11dffb0ef9d2115bd20b1261e3c6ed
ENCFF474UII.tabix.bed.gz.tbi 218.67 KB cfaaad038481d48afb8ad35defd667f1
genomic_resource.yaml 2.04 KB d25e097e4ecad76a6db24b64d686e9d8
statistics/