type: position_score
table:
  filename: ENCFF460PEQ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR433FJP
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR433FJP [biosample_summary="Homo sapiens mesenchymal stem cell originated from H1" and target="H3K18ac"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR433FJP [biosample_summary="Homo sapiens mesenchymal stem cell originated from H1" and target="H3K18ac"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: male embryo


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN007BIT|/analyses/ENCAN007BIT/}
    has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}


    **audit\_internal\_action**: Released analysis {ENCAN007BIT|/analyses/ENCAN007BIT/}
    has in progress subobject document {f96f9802-55c1-495f-9cc7-03594779b870|/documents/f96f9802-55c1-495f-9cc7-03594779b870/}


    **audit\_warning**: PBC1 (PCR Bottlenecking Coefficient 1, M1/M\_distinct) is
    the ratio of the number of genomic locations where exactly one read maps uniquely
    (M1) to the number of genomic locations where some reads map (M\_distinct). A
    PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate
    bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking.
    PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments
    file {ENCFF884MEA|/files/ENCFF884MEA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38
    pipeline was generated from a library with PBC1 value of 0.90.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR433FJP
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: male embryo
    biosample_summary: Homo sapiens mesenchymal stem cell originated from H1
    replication_type: unreplicated
    biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000134/
    perturbed: false
    doi: 10.17989/ENCSR433FJP
    date_created: '2015-10-01T07:16:34.402290+00:00'
    date_released: '2013-07-31'
    submitter_comment: ''
    target: H3K18ac