Resource

Id Histone_ChIP-seq/ENCSR430RVPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR430RVP [biosample_summary="Homo sapiens amnion tissue male embryo (16 weeks)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR430RVP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000305/
  • biosample_summary: Homo sapiens amnion tissue male embryo (16 weeks)
  • date_created: 2015-09-15T20:27:29.834496+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR430RVP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR430RVP float

Histone_ChIP-seq_ENCSR430RVP
Histone_ChIP-seq ENCSR430RVP [biosample_summary="Homo sapiens amnion tissue male embryo (16 weeks)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR430RVP [1.96, 15.7]
n
17,939,567
mean
4.66
sd
1.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 179395670.56% 34409
chr1 1975016 0.79% 3708
chr2 1549602 0.64% 2979
chr3 1168314 0.59% 2318
chr4 650890 0.34% 1303
chr5 936294 0.52% 1780
chr6 1007754 0.59% 1990
chr7 798761 0.50% 1551
chr8 790502 0.54% 1532
chr9 929230 0.67% 1811
chr10 982950 0.73% 1798
chr11 1114490 0.83% 2070
chr12 817458 0.61% 1575
chr13 404872 0.35% 777
chr14 747567 0.70% 1358
chr15 638049 0.63% 1220
chr16 490568 0.54% 960
chr17 906531 1.09% 1695
chr18 374489 0.47% 707
chr19 555328 0.95% 1106
chr20 434272 0.67% 851
chr21 220901 0.47% 422
chr22 374344 0.74% 740
chrX 68342 0.04% 151
chrY 3043 0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34409 205 6697 521.36 434
global segment-length histogram

Files

Filename Size md5
ENCFF340JNX.bed.gz 625.41 KB dcd38d493edf267861bad26b7eb67545
ENCFF340JNX.tabix.bed.gz 330.43 KB 898deabf952a0fdeebb55aaa5dd0debf
ENCFF340JNX.tabix.bed.gz.tbi 161.21 KB 21beec93d2677ff88b2a8abba3a03b16
genomic_resource.yaml 1.49 KB 96ff5c1b354c1434fbc2ff17aaa0a745
statistics/