Resource
| Id | Histone_ChIP-seq/ENCSR429QYS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR429QYS [biosample_summary="Homo sapiens Loucy" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN690FIZ|/analyses/ENCAN690FIZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN690FIZ|/analyses/ENCAN690FIZ/} has in progress subobject document {9441622e-cb93-4119-8a34-7665a07329d3|/documents/9441622e-cb93-4119-8a34-7665a07329d3/} audit_not_compliant: Processed alignments file {ENCFF991GST|/files/ENCFF991GST/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15148430 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF386STB|/files/ENCFF386STB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 26706124 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR429QYS | float |
Histone_ChIP-seq_ENCSR429QYS |
Histone_ChIP-seq ENCSR429QYS [biosample_summary="Homo sapiens Loucy" and target="H3K79me2"]
|
 |
[1.67, 38.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 132761741 | 4.13% | 76447 |
| chr1 | 12914118 | 5.19% | 6932 |
| chr2 | 10218793 | 4.22% | 5920 |
| chr3 | 8721247 | 4.40% | 4993 |
| chr4 | 5730519 | 3.01% | 3396 |
| chr5 | 5817303 | 3.20% | 3364 |
| chr6 | 7827785 | 4.58% | 4782 |
| chr7 | 6977385 | 4.38% | 4204 |
| chr8 | 4984610 | 3.43% | 2891 |
| chr9 | 5774703 | 4.17% | 3392 |
| chr10 | 6763637 | 5.06% | 3810 |
| chr11 | 6002579 | 4.44% | 3370 |
| chr12 | 6719220 | 5.04% | 3672 |
| chr13 | 3235065 | 2.83% | 1850 |
| chr14 | 5331947 | 4.98% | 2847 |
| chr15 | 4938993 | 4.84% | 2819 |
| chr16 | 4231043 | 4.68% | 2526 |
| chr17 | 7131645 | 8.57% | 3876 |
| chr18 | 2463317 | 3.06% | 1602 |
| chr19 | 5051316 | 8.62% | 3063 |
| chr20 | 3634338 | 5.64% | 2214 |
| chr21 | 1625880 | 3.48% | 885 |
| chr22 | 3506006 | 6.90% | 1880 |
| chrX | 3160292 | 2.03% | 2159 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 76447 | 203 | 93359 | 1736.65 | 891 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF094IFB.bed.gz | 1.83 MB | 64c33857497bf5ae955e1dc382db26ea |
| ENCFF094IFB.tabix.bed.gz | 822.12 KB | 2a636f81fe325152722ba12d5b4ede74 |
| ENCFF094IFB.tabix.bed.gz.tbi | 117.96 KB | 8a095152753cfe108351330f0cf53e59 |
| genomic_resource.yaml | 2.61 KB | 1c3f3925a3315878678f4e18bc5b789c |
| statistics/ |