Resource
| Id | Histone_ChIP-seq/ENCSR427TBJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR427TBJ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (43 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN335CJR|/analyses/ENCAN335CJR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF033AFR|/files/ENCFF033AFR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF033AFR|/files/ENCFF033AFR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.88. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR427TBJ | float |
Histone_ChIP-seq_ENCSR427TBJ |
Histone_ChIP-seq ENCSR427TBJ [biosample_summary="Homo sapiens heart right ventricle tissue male adult (43 years)" and target="H3K36me3"]
|
 |
[1.69, 20.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 226012300 | 7.02% | 66781 |
| chr1 | 22154925 | 8.90% | 6433 |
| chr2 | 18967895 | 7.83% | 5430 |
| chr3 | 15277378 | 7.70% | 4604 |
| chr4 | 10631454 | 5.59% | 3321 |
| chr5 | 12159260 | 6.70% | 3544 |
| chr6 | 11448410 | 6.70% | 3495 |
| chr7 | 10724240 | 6.73% | 3476 |
| chr8 | 8579830 | 5.91% | 2637 |
| chr9 | 9580987 | 6.92% | 2962 |
| chr10 | 10526617 | 7.87% | 3254 |
| chr11 | 10470495 | 7.75% | 3012 |
| chr12 | 12567430 | 9.43% | 3438 |
| chr13 | 5840648 | 5.11% | 1872 |
| chr14 | 8080405 | 7.55% | 2204 |
| chr15 | 8765372 | 8.59% | 2450 |
| chr16 | 7950516 | 8.80% | 2185 |
| chr17 | 10905152 | 13.10% | 2984 |
| chr18 | 4363663 | 5.43% | 1454 |
| chr19 | 10145254 | 17.31% | 2685 |
| chr20 | 5803255 | 9.01% | 1632 |
| chr21 | 2387223 | 5.11% | 685 |
| chr22 | 4526586 | 8.91% | 1391 |
| chrX | 3816906 | 2.45% | 1523 |
| chrY | 338399 | 0.59% | 110 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 66781 | 345 | 101456 | 3384.38 | 1801 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF862DZK.bed.gz | 1.65 MB | f2ae4a148863ad723f728d00e22805c1 |
| ENCFF862DZK.tabix.bed.gz | 738.41 KB | 8d9d389c009052709e42817859c5b6f1 |
| ENCFF862DZK.tabix.bed.gz.tbi | 135.96 KB | 753cfc42faa0aee418ee5f0b1987a8ed |
| genomic_resource.yaml | 2.8 KB | 1a3d6ea57b029260e95d934f414ea880 |
| statistics/ |