Resource
| Id | Histone_ChIP-seq/ENCSR426VHO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR426VHO [biosample_summary="Homo sapiens spleen tissue male adult (37 years)" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (37 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN019ZCE|/analyses/ENCAN019ZCE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF336HUM|/files/ENCFF336HUM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF336HUM|/files/ENCFF336HUM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.73. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR426VHO | float |
Histone_ChIP-seq_ENCSR426VHO |
Histone_ChIP-seq ENCSR426VHO [biosample_summary="Homo sapiens spleen tissue male adult (37 years)" and target="H3K27ac"]
|
 |
[1.31, 93.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 149287841 | 4.64% | 75838 |
| chr1 | 14619567 | 5.87% | 7268 |
| chr2 | 11810333 | 4.88% | 6168 |
| chr3 | 9150677 | 4.61% | 5003 |
| chr4 | 5569089 | 2.93% | 3126 |
| chr5 | 7167398 | 3.95% | 3720 |
| chr6 | 8317673 | 4.87% | 4352 |
| chr7 | 6763387 | 4.24% | 3718 |
| chr8 | 5904620 | 4.07% | 3100 |
| chr9 | 6462691 | 4.67% | 3304 |
| chr10 | 7153297 | 5.35% | 3608 |
| chr11 | 7908847 | 5.85% | 3737 |
| chr12 | 7765691 | 5.83% | 3900 |
| chr13 | 3100348 | 2.71% | 1731 |
| chr14 | 5477384 | 5.12% | 2658 |
| chr15 | 5174612 | 5.07% | 2589 |
| chr16 | 5467114 | 6.05% | 2716 |
| chr17 | 8354576 | 10.03% | 3906 |
| chr18 | 2480547 | 3.09% | 1398 |
| chr19 | 7272545 | 12.41% | 3191 |
| chr20 | 4458697 | 6.92% | 2159 |
| chr21 | 1954286 | 4.18% | 965 |
| chr22 | 3717786 | 7.32% | 1758 |
| chrX | 3086122 | 1.98% | 1668 |
| chrY | 150554 | 0.26% | 95 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 75838 | 250 | 68437 | 1968.51 | 1310 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF538SIJ.bed.gz | 1.93 MB | ced26b6fe8129c0c4cd3eb0a8d263eb8 |
| ENCFF538SIJ.tabix.bed.gz | 851.89 KB | 3517cd4652a5faff81d4c19a557d503b |
| ENCFF538SIJ.tabix.bed.gz.tbi | 242.95 KB | 0d8e22d7628e754127325cd2f78edb50 |
| genomic_resource.yaml | 2.73 KB | 420ca4c129a14c070020bb25448604d7 |
| statistics/ |