Resource

Id Histone_ChIP-seq/ENCSR425NQTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR425NQT [biosample_summary="Homo sapiens adrenal gland tissue female adult (30 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR425NQT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002369/
  • biosample_summary: Homo sapiens adrenal gland tissue female adult (30 years)
  • date_created: 2015-10-01T07:17:17.756686+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR425NQT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (30 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR425NQT float

Histone_ChIP-seq_ENCSR425NQT
Histone_ChIP-seq ENCSR425NQT [biosample_summary="Homo sapiens adrenal gland tissue female adult (30 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR425NQT [1.7, 61.5]
n
29,653,214
mean
20.7
sd
11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 296532140.92% 22135
chr1 2904104 1.17% 2169
chr2 2134135 0.88% 1529
chr3 1725663 0.87% 1262
chr4 1258487 0.66% 887
chr5 1482878 0.82% 1055
chr6 1748744 1.02% 1303
chr7 1484027 0.93% 1115
chr8 1136353 0.78% 814
chr9 1233025 0.89% 913
chr10 1291420 0.97% 929
chr11 1590668 1.18% 1162
chr12 1615872 1.21% 1185
chr13 639297 0.56% 459
chr14 989837 0.92% 723
chr15 949754 0.93% 684
chr16 1084285 1.20% 861
chr17 1594478 1.92% 1211
chr18 551368 0.69% 373
chr19 1701763 2.90% 1492
chr20 741210 1.15% 543
chr21 296822 0.64% 222
chr22 610114 1.20% 483
chrX 888426 0.57% 760
chrY 484 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 22135 195 15178 1339.65 1160
global segment-length histogram

Files

Filename Size md5
ENCFF958KCT.bed.gz 609.23 KB 10ccfc50062dfa530fa59bf2a7a724e2
ENCFF958KCT.tabix.bed.gz 258.85 KB 6ca1e33bc1b9d93b1e5a689aa610eaea
ENCFF958KCT.tabix.bed.gz.tbi 142.35 KB b8083fc0a0d04004a5914bfd9d8b1ea8
genomic_resource.yaml 1.99 KB 858ebe0403e62de5b5c449b92524696c
statistics/