Resource
| Id | Histone_ChIP-seq/ENCSR424ZJH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR424ZJH [biosample_summary="Homo sapiens IMR-90" and target="H2AK5ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN796KSX|/analyses/ENCAN796KSX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF520KCR|/files/ENCFF520KCR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10484156 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AK5ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF007WWV|/files/ENCFF007WWV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17954277 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AK5ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR424ZJH | float |
Histone_ChIP-seq_ENCSR424ZJH |
Histone_ChIP-seq ENCSR424ZJH [biosample_summary="Homo sapiens IMR-90" and target="H2AK5ac"]
|
 |
[1.8, 39.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 76289682 | 2.37% | 239764 |
| chr1 | 6996298 | 2.81% | 21570 |
| chr1_KI270713v1_random | 164 | 0.40% | 1 |
| chr2 | 6823489 | 2.82% | 21490 |
| chr3 | 4540501 | 2.29% | 14662 |
| chr4 | 2737414 | 1.44% | 9986 |
| chr5 | 4299909 | 2.37% | 13903 |
| chr6 | 4047536 | 2.37% | 13996 |
| chr7 | 3459791 | 2.17% | 11417 |
| chr8 | 3645560 | 2.51% | 12055 |
| chr9 | 3693308 | 2.67% | 11185 |
| chr10 | 3775095 | 2.82% | 11936 |
| chr11 | 4498344 | 3.33% | 13431 |
| chr12 | 3656833 | 2.74% | 11785 |
| chr13 | 1871086 | 1.64% | 6442 |
| chr14 | 2418998 | 2.26% | 7471 |
| chr15 | 3019965 | 2.96% | 9157 |
| chr16 | 2843999 | 3.15% | 8016 |
| chr17 | 4058106 | 4.87% | 11320 |
| chr17_GL000205v2_random | 230 | 0.12% | 2 |
| chr18 | 1662866 | 2.07% | 5672 |
| chr19 | 2376347 | 4.05% | 6645 |
| chr20 | 2206877 | 3.42% | 6539 |
| chr21 | 1159914 | 2.48% | 3522 |
| chr22 | 1832549 | 3.61% | 5112 |
| chrUn_GL000195v1 | 917 | 0.50% | 4 |
| chrX | 663586 | 0.43% | 2445 |
| 3340 contigs with no values (185895268 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 239764 | 105 | 6371 | 318.19 | 240 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF223EHT.bed.gz | 5.32 MB | 6971e004dbc88c7dc2c18c8ba70dd737 |
| ENCFF223EHT.tabix.bed.gz | 2.36 MB | 2eaa8d0062ea12065d22c70da9519243 |
| ENCFF223EHT.tabix.bed.gz.tbi | 333.53 KB | 33af551ace4d0f183f9c00c425f15397 |
| genomic_resource.yaml | 2.36 KB | c83873e68db04475af57a89ba059dac1 |
| statistics/ |