Resource

Id Histone_ChIP-seq/ENCSR423WXDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR423WXD [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue male adult (87 years)" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR423WXD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Alzheimer's disease, Cognitive impairment; dorsolateral prefrontal cortex tissue male adult (87 years)
  • date_created: 2021-04-30T04:18:20.555816+00:00
  • date_released: 2021-06-24
  • doi: 10.17989/ENCSR423WXD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (87 years) with Alzheimer's disease, Cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR423WXD float

Histone_ChIP-seq_ENCSR423WXD
Histone_ChIP-seq ENCSR423WXD [biosample_summary="Homo sapiens with Alzheimer''s disease, Cognitive impairment; dorsolateral prefrontal cortex tissue male adult (87 years)" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR423WXD [1.68, 12]
n
20,359,783
mean
4.9
sd
1.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 203597830.63% 29966
chr1 1645921 0.66% 2574
chr2 1600538 0.66% 2352
chr3 626929 0.32% 1006
chr4 898785 0.47% 1169
chr5 1100547 0.61% 1510
chr6 1584838 0.93% 1974
chr7 1165114 0.73% 1457
chr8 861367 0.59% 1361
chr9 704712 0.51% 975
chr10 1246137 0.93% 1879
chr11 710113 0.53% 1130
chr12 1003779 0.75% 1397
chr13 505221 0.44% 737
chr14 893414 0.83% 1347
chr15 754298 0.74% 1211
chr16 811974 0.90% 1338
chr17 1259222 1.51% 1656
chr18 398729 0.50% 651
chr19 1000375 1.71% 1575
chr20 802227 1.24% 1304
chr21 319427 0.68% 533
chr22 337976 0.67% 622
chrX 125556 0.08% 199
chrY 2584 <0.01% 9
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29966 185 33326 679.43 394
global segment-length histogram

Files

Filename Size md5
ENCFF736DVV.bed.gz 527.78 KB 3bc93c1931ad98f7e1c65b85b45f897d
ENCFF736DVV.tabix.bed.gz 282.84 KB 703c1e3f2046b0f5d36bd9c30dac6153
ENCFF736DVV.tabix.bed.gz.tbi 114.57 KB 9d389207bfc4438005ca4e0ac96be305
genomic_resource.yaml 1.81 KB 28bfe202a276d673d318e80450967803
statistics/