Resource

Id Histone_ChIP-seq/ENCSR423UOTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR423UOT [biosample_summary="Homo sapiens SK-N-SH" and target="H3K9me2"]
Description
Labels
  • accession: ENCSR423UOT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003072/
  • biosample_summary: Homo sapiens SK-N-SH
  • date_created: 2015-05-19T17:03:20.958414+00:00
  • date_released: 2017-01-12
  • doi: 10.17989/ENCSR423UOT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR423UOT float

Histone_ChIP-seq_ENCSR423UOT
Histone_ChIP-seq ENCSR423UOT [biosample_summary="Homo sapiens SK-N-SH" and target="H3K9me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR423UOT [1.12, 4.07]
n
2,623,977
mean
2.45
sd
0.308

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 26239770.08% 7124
chr1 148520 0.06% 415
chr1_KI270709v1_random 391 0.58% 1
chr2 248340 0.10% 692
chr3 166007 0.08% 468
chr4 197935 0.10% 546
chr5 183292 0.10% 495
chr6 138040 0.08% 388
chr7 475455 0.30% 1195
chr8 115765 0.08% 325
chr9 90812 0.07% 251
chr10 88172 0.07% 240
chr11 79057 0.06% 223
chr12 112503 0.08% 316
chr13 101370 0.09% 272
chr14 52730 0.05% 145
chr14_KI270725v1_random 826 0.48% 2
chr15 49331 0.05% 129
chr16 30241 0.03% 88
chr17 71162 0.09% 178
chr17_GL000205v2_random 647 0.35% 1
chr18 66432 0.08% 182
chr19 11957 0.02% 33
chr20 24109 0.04% 72
chr21 35807 0.08% 97
chr22 5015 0.01% 15
chr22_KI270735v1_random 342 0.80% 1
chrUn_GL000219v1 234 0.13% 1
chrUn_KI270438v1 538 0.48% 1
chrUn_KI270466v1 291 23.60% 1
chrUn_KI270467v1 377 9.62% 1
chrUn_KI270507v1 434 8.11% 1
chrUn_KI270509v1 317 13.68% 1
chrUn_KI270511v1 413 5.08% 1
chrUn_KI270512v1 266 1.17% 1
chrUn_KI270538v1 410 0.45% 1
chrUn_KI270746v1 1002 1.51% 2
chrUn_KI270749v1 345 0.22% 1
chrUn_KI270750v1 776 0.52% 2
chrUn_KI270751v1 1143 0.76% 3
chrX 123173 0.08% 337
3326 contigs with no values (184884939 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 7124 205 1219 368.33 341
global segment-length histogram

Files

Filename Size md5
ENCFF360FDX.bed.gz 138.59 KB c634ed15e70f49e670c3e29a489a78c3
ENCFF360FDX.tabix.bed.gz 72.94 KB f3edc3ccff1634c4f098ac5104eb5da6
ENCFF360FDX.tabix.bed.gz.tbi 66.7 KB c7ef0f7e95441e2ea38af85ca8dbf573
genomic_resource.yaml 1.37 KB 99cb4315d464ae00f9cacdf4e6da908b
statistics/