Resource

Id Histone_ChIP-seq/ENCSR422YCPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR422YCP [biosample_summary="Homo sapiens BLaER1 3 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR422YCP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 3 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:36.967226+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR422YCP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 3 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR422YCP float

Histone_ChIP-seq_ENCSR422YCP
Histone_ChIP-seq ENCSR422YCP [biosample_summary="Homo sapiens BLaER1 3 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR422YCP [1.33, 20.1]
n
140,161,136
mean
4.98
sd
2.44

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1401611364.36% 193709
chr1 9703516 3.90% 13572
chr1_KI270706v1_random 9520 5.44% 19
chr1_KI270707v1_random 1307 4.08% 3
chr1_KI270708v1_random 23793 18.63% 42
chr1_KI270709v1_random 17068 25.53% 16
chr1_KI270710v1_random 1602 3.99% 3
chr1_KI270712v1_random 4350 2.47% 3
chr1_KI270714v1_random 1644 3.94% 1
chr2 10812600 4.46% 15641
chr2_KI270715v1_random 371 0.23% 1
chr2_KI270716v1_random 7931 5.16% 6
chr3 8797936 4.44% 12962
chr3_GL000221v1_random 4533 2.92% 14
chr4 7799664 4.10% 11530
chr4_GL000008v2_random 8841 4.22% 12
chr5 8745041 4.82% 12554
chr5_GL000208v1_random 4005 4.32% 10
chr6 6982411 4.09% 10477
chr7 8528032 5.35% 11465
chr8 8994472 6.20% 11609
chr9 5168292 3.73% 7444
chr9_KI270719v1_random 5198 2.94% 9
chr9_KI270720v1_random 1185 3.03% 3
chr10 6776752 5.06% 9427
chr11 5448969 4.03% 7598
chr12 6480768 4.86% 8509
chr13 4372868 3.82% 6667
chr14 4150184 3.88% 5897
chr14_GL000009v2_random 7729 3.83% 17
chr14_GL000194v1_random 10976 5.73% 10
chr14_GL000225v1_random 64068 30.34% 88
chr14_KI270722v1_random 18471 9.52% 35
chr14_KI270723v1_random 4645 12.19% 5
chr14_KI270724v1_random 3373 8.53% 4
chr14_KI270725v1_random 5630 3.26% 7
chr14_KI270726v1_random 276 0.63% 1
chr15 3771357 3.70% 5420
chr15_KI270727v1_random 837 0.19% 3
chr16 3425466 3.79% 4495
chr16_KI270728v1_random 48063 2.57% 69
chr17 3058033 3.67% 3906
chr17_GL000205v2_random 9034 4.87% 15
chr17_KI270729v1_random 200867 71.52% 57
chr17_KI270730v1_random 31970 28.40% 18
chr18 3134393 3.90% 4602
chr19 7742441 13.21% 6189
chr20 2796985 4.34% 3825
chr21 2335623 5.00% 3057
chr22 1515253 2.98% 2040
chr22_KI270732v1_random 3812 9.18% 4
chr22_KI270733v1_random 17080 9.50% 33
chr22_KI270735v1_random 5291 12.36% 3
chr22_KI270736v1_random 127568 70.12% 37
chr22_KI270737v1_random 57074 54.96% 56
chr22_KI270738v1_random 54161 54.50% 39
chr22_KI270739v1_random 250 0.34% 1
chrUn_GL000195v1 1422 0.78% 5
chrUn_GL000213v1 1941 1.18% 5
chrUn_GL000214v1 8541 6.20% 16
chrUn_GL000216v2 103384 58.54% 33
chrUn_GL000218v1 1940 1.20% 6
chrUn_GL000219v1 14373 8.02% 18
chrUn_GL000220v1 6568 4.06% 10
chrUn_GL000224v1 68007 37.85% 76
chrUn_KI270320v1 275 6.23% 1
chrUn_KI270322v1 848 3.95% 3
chrUn_KI270330v1 400 24.21% 1
chrUn_KI270333v1 1591 58.95% 3
chrUn_KI270336v1 641 62.48% 2
chrUn_KI270337v1 717 63.96% 1
chrUn_KI270364v1 265 9.28% 1
chrUn_KI270420v1 284 12.24% 1
chrUn_KI270429v1 270 19.84% 1
chrUn_KI270435v1 21408 23.02% 44
chrUn_KI270438v1 73731 65.54% 25
chrUn_KI270442v1 134109 34.21% 77
chrUn_KI270465v1 543 30.61% 1
chrUn_KI270468v1 764 18.84% 1
chrUn_KI270507v1 263 4.91% 1
chrUn_KI270508v1 1070 54.84% 1
chrUn_KI270509v1 1335 57.59% 2
chrUn_KI270510v1 272 11.26% 1
chrUn_KI270512v1 11149 49.14% 15
chrUn_KI270515v1 2771 43.56% 5
chrUn_KI270516v1 547 42.08% 2
chrUn_KI270517v1 1317 40.49% 1
chrUn_KI270518v1 457 20.91% 1
chrUn_KI270519v1 46696 33.81% 64
chrUn_KI270521v1 394 5.16% 1
chrUn_KI270522v1 291 5.13% 1
chrUn_KI270529v1 342 18.01% 1
chrUn_KI270538v1 2388 2.62% 4
chrUn_KI270579v1 378 1.22% 1
chrUn_KI270580v1 1435 92.40% 1
chrUn_KI270582v1 250 3.84% 1
chrUn_KI270583v1 635 45.36% 1
chrUn_KI270584v1 2688 59.56% 4
chrUn_KI270588v1 1723 27.98% 4
chrUn_KI270589v1 4376 9.84% 5
chrUn_KI270590v1 3457 73.79% 5
chrUn_KI270591v1 1166 20.12% 2
chrUn_KI270741v1 3929 2.50% 10
chrUn_KI270742v1 1965 1.05% 4
chrUn_KI270743v1 4714 2.24% 8
chrUn_KI270744v1 12598 7.48% 16
chrUn_KI270746v1 810 1.22% 3
chrUn_KI270747v1 4003 2.01% 4
chrUn_KI270748v1 446 0.48% 1
chrUn_KI270749v1 4646 2.93% 6
chrUn_KI270750v1 1566 1.05% 3
chrUn_KI270751v1 7941 5.27% 17
chrUn_KI270753v1 4029 6.40% 9
chrUn_KI270754v1 17565 43.70% 21
chrUn_KI270755v1 298 0.81% 1
chrUn_KI270756v1 73664 92.55% 36
chrUn_KI270757v1 11857 16.64% 19
chrX 7965964 5.11% 13194
chrY 214140 0.37% 372
3248 contigs with no values (118497617 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 193709 250 57275 723.57 439
global segment-length histogram

Files

Filename Size md5
ENCFF718UFQ.bed.gz 3.69 MB 1c3b260e603f6ad26c991ee330b3fcc5
ENCFF718UFQ.tabix.bed.gz 1.84 MB 2e0e009f66e02dff1a441e4796268f74
ENCFF718UFQ.tabix.bed.gz.tbi 495.34 KB e1af33e600c9dd17a5ace0ee10343ad5
genomic_resource.yaml 3.11 KB 73ed3cb689a0e4ebde8a2b2a8ecaaee6
statistics/