Resource

Id Histone_ChIP-seq/ENCSR421CEEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR421CEE [biosample_summary="Homo sapiens BLaER1 9 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me1"]
Description
Labels
  • accession: ENCSR421CEE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 9 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:10.642115+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR421CEE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 9 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K4me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR421CEE float

Histone_ChIP-seq_ENCSR421CEE
Histone_ChIP-seq ENCSR421CEE [biosample_summary="Homo sapiens BLaER1 9 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me1"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR421CEE [1.36, 27.7]
n
247,403,979
mean
8.2
sd
4.26

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 2474039797.69% 216414
chr1 23152875 9.30% 19916
chr1_KI270706v1_random 850 0.49% 3
chr1_KI270708v1_random 251 0.20% 1
chr1_KI270713v1_random 8767 21.52% 10
chr1_KI270714v1_random 1399 3.35% 3
chr2 19335476 7.98% 17285
chr3 13357018 6.74% 12802
chr3_GL000221v1_random 4345 2.80% 9
chr4 8915186 4.69% 8865
chr4_GL000008v2_random 548 0.26% 2
chr5 11938302 6.58% 10908
chr6 12009941 7.03% 11395
chr7 12307477 7.72% 11280
chr8 11685147 8.05% 10210
chr9 10920146 7.89% 9274
chr9_KI270719v1_random 800 0.45% 2
chr10 12984176 9.70% 11398
chr11 12072350 8.94% 10124
chr11_KI270721v1_random 2646 2.64% 7
chr12 11019501 8.27% 9850
chr13 5541412 4.85% 5549
chr14 8180175 7.64% 6831
chr14_GL000009v2_random 2826 1.40% 4
chr14_GL000194v1_random 2252 1.18% 5
chr14_GL000225v1_random 844 0.40% 2
chr14_KI270722v1_random 345 0.18% 1
chr14_KI270723v1_random 1155 3.03% 2
chr14_KI270726v1_random 2791 6.38% 5
chr15 8238120 8.08% 7141
chr15_KI270727v1_random 3708 0.83% 6
chr16 11140131 12.33% 8754
chr16_KI270728v1_random 3358 0.18% 7
chr17 14096754 16.93% 10625
chr17_GL000205v2_random 12953 6.98% 12
chr17_KI270729v1_random 1043 0.37% 2
chr18 5045814 6.28% 4726
chr19 10383343 17.71% 8375
chr20 8694532 13.49% 6960
chr21 3719528 7.96% 3102
chr22 7840247 15.43% 5572
chr22_KI270731v1_random 3033 2.01% 5
chr22_KI270733v1_random 3483 1.94% 8
chr22_KI270734v1_random 2279 1.38% 6
chrUn_GL000195v1 2674 1.46% 6
chrUn_GL000214v1 1765 1.28% 2
chrUn_GL000216v2 1928 1.09% 3
chrUn_GL000218v1 411 0.26% 1
chrUn_GL000219v1 9776 5.46% 17
chrUn_GL000220v1 965 0.60% 3
chrUn_GL000224v1 809 0.45% 2
chrUn_KI270438v1 3039 2.70% 6
chrUn_KI270442v1 1349 0.34% 2
chrUn_KI270519v1 2756 2.00% 5
chrUn_KI270742v1 557 0.30% 2
chrUn_KI270744v1 6098 3.62% 7
chrUn_KI270751v1 1654 1.10% 3
chrUn_KI270753v1 3071 4.88% 3
chrX 4723305 3.03% 5297
chrY 6495 0.01% 11
3307 contigs with no values (121495700 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 216414 250 50750 1143.2 685
global segment-length histogram

Files

Filename Size md5
ENCFF067NOJ.bed.gz 4.66 MB 697bada211f2aa77a8b163ce1ddc1094
ENCFF067NOJ.tabix.bed.gz 2.16 MB 73d6a2d888930923367eae6a1e205788
ENCFF067NOJ.tabix.bed.gz.tbi 428.81 KB 53f02c00b10960232160dce4bb0b854e
genomic_resource.yaml 3.11 KB bc69d0670eaea13686c12c37d9498c77
statistics/