Resource

Id Histone_ChIP-seq/ENCSR420IOAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR420IOA [biosample_summary="Homo sapiens amnion tissue male embryo (16 weeks)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR420IOA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000305/
  • biosample_summary: Homo sapiens amnion tissue male embryo (16 weeks)
  • date_created: 2015-09-15T20:27:30.566736+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR420IOA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (16 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR420IOA float

Histone_ChIP-seq_ENCSR420IOA
Histone_ChIP-seq ENCSR420IOA [biosample_summary="Homo sapiens amnion tissue male embryo (16 weeks)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR420IOA [1.83, 30.4]
n
24,023,619
mean
12.6
sd
5.01

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 240236190.75% 19626
chr1 2389360 0.96% 1955
chr2 1643308 0.68% 1342
chr3 1354261 0.68% 1050
chr4 987930 0.52% 755
chr5 1152758 0.63% 877
chr6 1460525 0.86% 1135
chr7 1133033 0.71% 938
chr8 880611 0.61% 724
chr9 969913 0.70% 812
chr10 1001096 0.75% 808
chr11 1318112 0.98% 1059
chr12 1265795 0.95% 1007
chr13 478729 0.42% 393
chr14 808975 0.76% 665
chr15 783291 0.77% 638
chr16 946876 1.05% 796
chr17 1439619 1.73% 1172
chr18 397910 0.50% 337
chr19 1649067 2.81% 1390
chr20 618389 0.96% 531
chr21 225915 0.48% 205
chr22 495888 0.98% 447
chrX 597538 0.38% 571
chrY 24720 0.04% 19
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 19626 215 11313 1224.07 1076
global segment-length histogram

Files

Filename Size md5
ENCFF831NRO.bed.gz 416.0 KB be3f7e0081406fa981ce62d0febb9e44
ENCFF831NRO.tabix.bed.gz 207.42 KB bfbcb92be301e8c79c8d69e66003db26
ENCFF831NRO.tabix.bed.gz.tbi 126.18 KB aba9dbdd38ce2ebbd0bd9ca0a6cf2298
genomic_resource.yaml 1.49 KB 2b552c6d95c45745366154b3868af8b9
statistics/