Resource

Id Histone_ChIP-seq/ENCSR419BDTcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR419BDT [biosample_summary="Homo sapiens placenta tissue female embryo (113 days)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR419BDT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001987/
  • biosample_summary: Homo sapiens placenta tissue female embryo (113 days)
  • date_created: 2015-09-16T21:42:42.179173+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR419BDT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (113 days)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR419BDT float

Histone_ChIP-seq_ENCSR419BDT
Histone_ChIP-seq ENCSR419BDT [biosample_summary="Homo sapiens placenta tissue female embryo (113 days)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR419BDT [2.04, 89.4]
n
28,173,009
mean
28.5
sd
17.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 281730090.88% 26849
chr1 2764984 1.11% 2623
chr2 1860719 0.77% 1763
chr3 1582145 0.80% 1452
chr4 1140631 0.60% 1041
chr5 1387429 0.76% 1208
chr6 1762486 1.03% 1589
chr7 1408343 0.88% 1386
chr8 1012870 0.70% 1003
chr9 1135194 0.82% 1106
chr10 1149195 0.86% 1132
chr11 1559429 1.15% 1445
chr12 1483545 1.11% 1374
chr13 531578 0.46% 515
chr14 917647 0.86% 878
chr14_GL000009v2_random 265 0.13% 1
chr15 901185 0.88% 895
chr16 1114820 1.23% 1095
chr17 1629501 1.96% 1558
chr17_GL000205v2_random 2281 1.23% 2
chr17_KI270729v1_random 920 0.33% 2
chr18 449000 0.56% 459
chr19 1968253 3.36% 1870
chr20 692525 1.07% 714
chr21 266225 0.57% 276
chr22 603693 1.19% 616
chr22_KI270732v1_random 695 1.67% 1
chrUn_GL000218v1 368 0.23% 1
chrUn_GL000219v1 2188 1.22% 3
chrUn_KI270467v1 457 11.66% 1
chrUn_KI270749v1 556 0.35% 1
chrX 843882 0.54% 839
3335 contigs with no values (185091794 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 26849 205 12676 1049.31 829
global segment-length histogram

Files

Filename Size md5
ENCFF692EBB.bed.gz 671.51 KB d9cd180150f05410b327f2a4275cb185
ENCFF692EBB.tabix.bed.gz 300.88 KB 680a616510822033c2adb4448b9aa917
ENCFF692EBB.tabix.bed.gz.tbi 144.49 KB 1c45d86f0648342605e4f2bd63d62f8e
genomic_resource.yaml 1.5 KB 1f727d51cfad56f37b9cb91f1b944d1d
statistics/