Resource

Id Histone_ChIP-seq/ENCSR417IEJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR417IEJ [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR417IEJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_1001608/
  • biosample_summary: Homo sapiens foreskin fibroblast male newborn
  • date_created: 2015-09-15T20:26:41.097444+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR417IEJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male newborn
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR417IEJ float

Histone_ChIP-seq_ENCSR417IEJ
Histone_ChIP-seq ENCSR417IEJ [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR417IEJ [1.52, 17.9]
n
153,402,434
mean
5.09
sd
2.39

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1534024344.77% 200715
chr1 16780097 6.74% 20814
chr1_KI270709v1_random 592 0.89% 1
chr1_KI270712v1_random 5204 2.96% 10
chr1_KI270713v1_random 5300 13.01% 6
chr1_KI270714v1_random 3703 8.88% 10
chr2 12498408 5.16% 16876
chr3 8333582 4.20% 11776
chr4 4040069 2.12% 6022
chr5 6566349 3.62% 9512
chr6 6096692 3.57% 8844
chr7 6219776 3.90% 8190
chr8 5646882 3.89% 8249
chr9 7247870 5.24% 8926
chr9_KI270718v1_random 308 0.81% 1
chr9_KI270719v1_random 887 0.50% 2
chr10 8828204 6.60% 11625
chr11 11363128 8.41% 13526
chr12 6188098 4.64% 8546
chr13 2724508 2.38% 4289
chr14 4326685 4.04% 5976
chr14_GL000225v1_random 1496 0.71% 3
chr15 6099445 5.98% 7693
chr16 6129551 6.79% 7705
chr16_KI270728v1_random 289 0.02% 1
chr17 10480043 12.59% 11607
chr17_GL000205v2_random 5494 2.96% 8
chr18 2799356 3.48% 4526
chr19 5753859 9.82% 7280
chr20 7218728 11.20% 8951
chr21 1978366 4.24% 2703
chr22 5414999 10.66% 5997
chr22_KI270732v1_random 238 0.57% 1
chr22_KI270733v1_random 1165 0.65% 4
chr22_KI270738v1_random 290 0.29% 1
chrUn_GL000195v1 1895 1.04% 5
chrUn_GL000216v2 276 0.16% 1
chrUn_GL000218v1 205 0.13% 1
chrUn_GL000219v1 655 0.37% 1
chrUn_KI270442v1 698 0.18% 2
chrUn_KI270754v1 293 0.73% 1
chrX 634032 0.41% 1016
chrY 4719 0.01% 7
3324 contigs with no values (124814507 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 200715 175 29910 764.28 484
global segment-length histogram

Files

Filename Size md5
ENCFF786VSJ.bed.gz 3.87 MB 2ecb5eb75bba83f3429c130dae6675f8
ENCFF786VSJ.tabix.bed.gz 1.92 MB e248e42565901fd75e16e759d24baa8c
ENCFF786VSJ.tabix.bed.gz.tbi 266.74 KB b6bbc8b36b40974d41e5c12c1c4616c2
genomic_resource.yaml 1.46 KB 7a2233f581490e156745fbdfd6c75acf
statistics/