Resource

Id Histone_ChIP-seq/ENCSR413QXOcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR413QXO [biosample_summary="Homo sapiens large intestine tissue male embryo (108 days)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR413QXO
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000059/
  • biosample_summary: Homo sapiens large intestine tissue male embryo (108 days)
  • date_created: 2015-09-16T21:42:18.217290+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR413QXO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (108 days)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR413QXO float

Histone_ChIP-seq_ENCSR413QXO
Histone_ChIP-seq ENCSR413QXO [biosample_summary="Homo sapiens large intestine tissue male embryo (108 days)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR413QXO [1.91, 99.6]
n
36,880,313
mean
33.4
sd
18.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 368803131.15% 29979
chr1 3632551 1.46% 2952
chr1_KI270713v1_random 343 0.84% 1
chr2 2525116 1.04% 2017
chr3 2089888 1.05% 1597
chr4 1626862 0.86% 1209
chr5 1726853 0.95% 1279
chr6 2216333 1.30% 1679
chr7 1817164 1.14% 1502
chr8 1359086 0.94% 1112
chr9 1490382 1.08% 1247
chr10 1542746 1.15% 1262
chr11 2052925 1.52% 1643
chr12 1929168 1.45% 1471
chr13 745269 0.65% 581
chr14 1221118 1.14% 961
chr15 1144871 1.12% 947
chr16 1392805 1.54% 1199
chr17 2141131 2.57% 1842
chr17_GL000205v2_random 2567 1.38% 2
chr18 621818 0.77% 543
chr19 2367911 4.04% 2073
chr20 897703 1.39% 788
chr21 341879 0.73% 305
chr22 770921 1.52% 712
chrUn_GL000219v1 1147 0.64% 2
chrX 1175453 0.75% 1021
chrY 46303 0.08% 32
3339 contigs with no values (128671551 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29979 180 11580 1230.2 948
global segment-length histogram

Files

Filename Size md5
ENCFF190SPX.bed.gz 825.55 KB d556c790574ff0a79748d8a0b97e085c
ENCFF190SPX.tabix.bed.gz 346.21 KB a9568be99aa0cdc5189a71a69245580d
ENCFF190SPX.tabix.bed.gz.tbi 156.98 KB 764de5d0e9f4fd8e8dffa3a71e54b6ee
genomic_resource.yaml 1.99 KB 8855807513127cd1cbe3d482eaab6dae
statistics/