Resource
| Id | Histone_ChIP-seq/ENCSR407UEE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR407UEE [biosample_summary="Homo sapiens spleen tissue male adult (37 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (37 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN303NOG|/analyses/ENCAN303NOG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF311SGP|/files/ENCFF311SGP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 43200743 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR407UEE | float |
Histone_ChIP-seq_ENCSR407UEE |
Histone_ChIP-seq ENCSR407UEE [biosample_summary="Homo sapiens spleen tissue male adult (37 years)" and target="H3K36me3"]
|
 |
[1.16, 25.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 258126999 | 8.02% | 87301 |
| chr1 | 24810455 | 9.97% | 8251 |
| chr2 | 20758114 | 8.57% | 7228 |
| chr3 | 16526244 | 8.33% | 5824 |
| chr4 | 10653671 | 5.60% | 4027 |
| chr5 | 13253932 | 7.30% | 4637 |
| chr6 | 12627371 | 7.39% | 4709 |
| chr7 | 12537618 | 7.87% | 4809 |
| chr8 | 9389770 | 6.47% | 3482 |
| chr9 | 10782559 | 7.79% | 3644 |
| chr10 | 11406563 | 8.53% | 4116 |
| chr11 | 12515165 | 9.26% | 3797 |
| chr12 | 13810116 | 10.36% | 4307 |
| chr13 | 5835324 | 5.10% | 2307 |
| chr14 | 9114240 | 8.51% | 3041 |
| chr15 | 9600554 | 9.41% | 3177 |
| chr16 | 11091217 | 12.28% | 3156 |
| chr17 | 13613256 | 16.35% | 4201 |
| chr18 | 4367287 | 5.43% | 1693 |
| chr19 | 13419889 | 22.89% | 3611 |
| chr20 | 7446420 | 11.55% | 2232 |
| chr21 | 3071635 | 6.58% | 913 |
| chr22 | 6371266 | 12.54% | 1834 |
| chrX | 4806582 | 3.08% | 2141 |
| chrY | 317751 | 0.56% | 164 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 87301 | 275 | 135733 | 2956.75 | 1231 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF382JFO.bed.gz | 2.09 MB | c0c31c57118fa2aa1f955b3cb8357f8c |
| ENCFF382JFO.tabix.bed.gz | 950.83 KB | eb71c535b28da2eac1518e15654b5134 |
| ENCFF382JFO.tabix.bed.gz.tbi | 140.41 KB | 0fbe8aaae121613428f51bb3d790e05d |
| genomic_resource.yaml | 1.96 KB | 219b14655adfd26b55ccffa14711a745 |
| statistics/ |