Resource

Id Histone_ChIP-seq/ENCSR406AJHcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR406AJH [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (82 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR406AJH
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens dorsolateral prefrontal cortex tissue female adult (82 years)
  • date_created: 2021-04-30T04:18:17.837521+00:00
  • date_released: 2022-01-06
  • doi: 10.17989/ENCSR406AJH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (82 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR406AJH float

Histone_ChIP-seq_ENCSR406AJH
Histone_ChIP-seq ENCSR406AJH [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (82 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR406AJH [1.91, 52.6]
n
46,829,881
mean
22.1
sd
11.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 468298811.46% 29090
chr1 4574320 1.84% 2855
chr2 3251619 1.34% 2026
chr3 2776458 1.40% 1633
chr4 1947141 1.02% 1169
chr5 2364794 1.30% 1430
chr6 2726753 1.60% 1676
chr7 2253684 1.41% 1481
chr8 1854544 1.28% 1143
chr9 1935685 1.40% 1209
chr10 2036397 1.52% 1262
chr11 2509261 1.86% 1495
chr12 2474875 1.86% 1481
chr13 1077589 0.94% 678
chr14 1512005 1.41% 900
chr15 1464822 1.44% 912
chr16 1787453 1.98% 1128
chr17 2557158 3.07% 1580
chr18 883765 1.10% 549
chr19 2803621 4.78% 1853
chr20 1189698 1.85% 738
chr21 464036 0.99% 317
chr22 1028620 2.02% 658
chrX 1355583 0.87% 917
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29090 195 24594 1609.83 1310
global segment-length histogram

Files

Filename Size md5
ENCFF963UEV.bed.gz 699.3 KB 5ca81f0e5c14bc5938906e8839ea5bf0
ENCFF963UEV.tabix.bed.gz 321.1 KB 24a98aabe89335b96f1f2687f40fa99f
ENCFF963UEV.tabix.bed.gz.tbi 176.93 KB 7d4887ee695dca4e3163acd0ea9d653c
genomic_resource.yaml 1.57 KB 839f47f65695324389d37137d4e4f72c
statistics/