Resource

Id Histone_ChIP-seq/ENCSR405FZEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR405FZE [biosample_summary="Homo sapiens duodenal mucosa tissue male adult (59 years)" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR405FZE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000320/
  • biosample_summary: Homo sapiens duodenal mucosa tissue male adult (59 years)
  • date_created: 2015-09-15T19:51:47.378545+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR405FZE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (59 years)
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR405FZE float

Histone_ChIP-seq_ENCSR405FZE
Histone_ChIP-seq ENCSR405FZE [biosample_summary="Homo sapiens duodenal mucosa tissue male adult (59 years)" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR405FZE [2.03, 65.6]
n
27,857,130
mean
10.9
sd
7.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 278571300.87% 43557
chr1 2948684 1.18% 4412
chr2 1894945 0.78% 3014
chr3 1446913 0.73% 2290
chr4 916564 0.48% 1429
chr5 1191308 0.66% 1825
chr6 1441556 0.84% 2216
chr7 1216021 0.76% 1940
chr8 957950 0.66% 1569
chr9 1249621 0.90% 1992
chr10 1250440 0.93% 2002
chr11 1623431 1.20% 2454
chr12 1400969 1.05% 2124
chr13 548065 0.48% 877
chr14 977652 0.91% 1505
chr15 868811 0.85% 1379
chr16 1183452 1.31% 1984
chr17 1921483 2.31% 2862
chr18 461871 0.57% 743
chr19 1728207 2.95% 2651
chr20 798356 1.24% 1272
chr21 390944 0.84% 651
chr22 797537 1.57% 1247
chrM 10552 63.69% 8
chrX 610253 0.39% 1081
chrY 21545 0.04% 30
3341 contigs with no values (129060516 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43557 155 12156 639.56 466
global segment-length histogram

Files

Filename Size md5
ENCFF171XOG.bed.gz 972.99 KB b6c75455c3b32a608bd5ea3068d97771
ENCFF171XOG.tabix.bed.gz 453.52 KB f8eb94e2448d777909ece99a330a3404
ENCFF171XOG.tabix.bed.gz.tbi 171.61 KB a0463ba1fb1ab4471b04879c7cc60a2d
genomic_resource.yaml 2.0 KB 1321ef8755362b993e4c0d20fe8d11c0
statistics/