Resource

Id Histone_ChIP-seq/ENCSR404LJZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR404LJZ [biosample_summary="Homo sapiens MM.1S" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR404LJZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005724/
  • biosample_summary: Homo sapiens MM.1S
  • date_created: 2014-10-24T16:25:02.069329+00:00
  • date_released: 2016-05-06
  • doi: 10.17989/ENCSR404LJZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR404LJZ float

Histone_ChIP-seq_ENCSR404LJZ

Histone_ChIP-seq ENCSR404LJZ [biosample_summary="Homo sapiens MM.1S" and target="H3K27me3"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR404LJZ [1.46, 13.8]
n
73,327,694
mean
5.01
sd
1.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 733276942.28% 60005
chr1 11829674 4.75% 8449
chr2 2123609 0.88% 1947
chr3 1829009 0.92% 1737
chr4 2473003 1.30% 1533
chr5 1630630 0.90% 1658
chr6 1415316 0.83% 1398
chr7 3578343 2.25% 3072
chr8 2464353 1.70% 1840
chr9 4426267 3.20% 2947
chr10 2296012 1.72% 2123
chr11 4762892 3.53% 3576
chr12 1917339 1.44% 1690
chr13 490977 0.43% 379
chr14 808082 0.75% 1018
chr15 885268 0.87% 852
chr16 2944087 3.26% 2823
chr17 6511467 7.82% 4961
chr18 255465 0.32% 300
chr19 9772104 16.67% 10156
chr20 4167488 6.47% 2773
chr21 2213392 4.74% 1143
chr22 4263708 8.39% 3321
chrX 268309 0.17% 307
chrY 900 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 60005 190 21547 1222.03 762
global segment-length histogram

Files

Filename Size md5
ENCFF564UOD.bed.gz 1.24 MB 760fcc897005281a100158266e25559a
ENCFF564UOD.tabix.bed.gz 600.31 KB 6375716699ff3ac742f3a0074574157e
ENCFF564UOD.tabix.bed.gz.tbi 81.49 KB d3c58a8894ee39ee55a4a1de5abad920
genomic_resource.yaml 1.87 KB 10c21a38253a79a50d00c5cd80eb2aab
statistics/