Resource

Id Histone_ChIP-seq/ENCSR403PHScontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR403PHS [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR403PHS
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years)
  • date_created: 2021-04-30T04:18:18.167747+00:00
  • date_released: 2022-01-06
  • doi: 10.17989/ENCSR403PHS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (90 or above years) with mild cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR403PHS float

Histone_ChIP-seq_ENCSR403PHS
Histone_ChIP-seq ENCSR403PHS [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue male adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR403PHS [1.86, 41.1]
n
40,175,625
mean
16.7
sd
7.43

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 401756251.25% 23742
chr1 3937064 1.58% 2315
chr2 2773501 1.15% 1634
chr3 2377198 1.20% 1344
chr4 1623350 0.85% 900
chr5 2000619 1.10% 1140
chr6 2334348 1.37% 1352
chr7 1906467 1.20% 1162
chr8 1568593 1.08% 897
chr9 1653312 1.19% 998
chr10 1720542 1.29% 996
chr11 2203131 1.63% 1267
chr12 2114750 1.59% 1197
chr13 887619 0.78% 495
chr14 1301563 1.22% 740
chr15 1271293 1.25% 751
chr16 1561987 1.73% 962
chr17 2244469 2.70% 1344
chr18 743651 0.93% 438
chr19 2499427 4.26% 1600
chr20 1047177 1.62% 655
chr21 382227 0.82% 244
chr22 907245 1.79% 554
chrX 1080546 0.69% 739
chrY 35546 0.06% 18
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 23742 226 18173 1692.18 1517.5
global segment-length histogram

Files

Filename Size md5
ENCFF118NVV.bed.gz 577.73 KB ec4b0de5b0a8cf31924ee8e41e13d143
ENCFF118NVV.tabix.bed.gz 265.9 KB ed7fe3b23eb5367fb07938b7df37c9a8
ENCFF118NVV.tabix.bed.gz.tbi 152.6 KB 9ddbcf4ece54a266ec20b7d7e197e6c8
genomic_resource.yaml 1.76 KB a5572853a9116e9422da7749292cba5a
statistics/