Resource

Id Histone_ChIP-seq/ENCSR401VZLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR401VZL [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (81 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR401VZL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens dorsolateral prefrontal cortex tissue male adult (81 years)
  • date_created: 2015-09-15T19:52:31.637672+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR401VZL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (81 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR401VZL float

Histone_ChIP-seq_ENCSR401VZL
Histone_ChIP-seq ENCSR401VZL [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (81 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR401VZL [1.9, 62.3]
n
46,038,054
mean
17.6
sd
9.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 460380541.43% 34393
chr1 4476672 1.80% 3242
chr2 3120694 1.29% 2375
chr3 2686142 1.35% 1954
chr4 1829701 0.96% 1301
chr4_GL000008v2_random 474 0.23% 1
chr5 2300076 1.27% 1662
chr6 2709618 1.59% 1962
chr7 2125520 1.33% 1675
chr8 1817014 1.25% 1361
chr9 1885119 1.36% 1442
chr10 1986837 1.48% 1496
chr11 2572402 1.90% 1842
chr12 2412170 1.81% 1738
chr13 1017051 0.89% 764
chr14 1489992 1.39% 1093
chr14_GL000225v1_random 525 0.25% 1
chr14_KI270722v1_random 554 0.29% 1
chr15 1442877 1.41% 1089
chr16 1760961 1.95% 1353
chr17 2557755 3.07% 1892
chr17_GL000205v2_random 1690 0.91% 2
chr18 844768 1.05% 678
chr19 3016697 5.15% 2345
chr20 1196634 1.86% 918
chr21 428524 0.92% 364
chr22 1042439 2.05% 810
chr22_KI270736v1_random 663 0.36% 2
chrUn_GL000219v1 2840 1.58% 3
chrUn_KI270442v1 316 0.08% 1
chrUn_KI270519v1 369 0.27% 1
chrX 1269774 0.81% 998
chrY 41186 0.07% 27
3334 contigs with no values (127385257 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34393 235 10413 1338.59 1032
global segment-length histogram

Files

Filename Size md5
ENCFF644YTC.bed.gz 838.77 KB f7e8f066a80fe4338b8a13c85c7bc405
ENCFF644YTC.tabix.bed.gz 379.84 KB 034cb1192b95644e0281e459d81ba455
ENCFF644YTC.tabix.bed.gz.tbi 181.02 KB 874e868f8b13c9db9f024dd30b93aeb1
genomic_resource.yaml 1.56 KB 6a17099dee0463ddfa44c97aead02c03
statistics/