Resource

Id Histone_ChIP-seq/ENCSR400XSWcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR400XSW [biosample_summary="Homo sapiens BLaER1 18 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K27ac"]
Description
Labels
  • accession: ENCSR400XSW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 18 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:51:17.231372+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR400XSW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 18 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K27ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR400XSW float

Histone_ChIP-seq_ENCSR400XSW
Histone_ChIP-seq ENCSR400XSW [biosample_summary="Homo sapiens BLaER1 18 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K27ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR400XSW [1.17, 74.6]
n
96,936,412
mean
16.9
sd
14.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 969364123.01% 76894
chr1 9218898 3.70% 7367
chr1_KI270713v1_random 1162 2.85% 2
chr2 6955727 2.87% 5611
chr3 5225929 2.64% 4297
chr3_GL000221v1_random 582 0.37% 1
chr4 3534706 1.86% 2990
chr5 4991188 2.75% 3885
chr6 5047231 2.95% 3932
chr7 4687347 2.94% 3954
chr8 4188282 2.89% 3506
chr9 3986329 2.88% 3218
chr9_KI270718v1_random 1391 3.66% 4
chr9_KI270719v1_random 385 0.22% 1
chr10 4655020 3.48% 3634
chr11 4591205 3.40% 3601
chr11_KI270721v1_random 553 0.55% 1
chr12 4916898 3.69% 3748
chr13 2206422 1.93% 1741
chr14 3176705 2.97% 2492
chr14_GL000009v2_random 258 0.13% 1
chr14_GL000194v1_random 715 0.37% 1
chr14_KI270723v1_random 672 1.76% 2
chr15 3024656 2.97% 2418
chr15_KI270727v1_random 340 0.08% 1
chr16 4334286 4.80% 3470
chr16_KI270728v1_random 1317 0.07% 2
chr17 5728160 6.88% 4194
chr17_GL000205v2_random 11295 6.09% 8
chr18 1889785 2.35% 1509
chr19 5108008 8.71% 3790
chr20 3093688 4.80% 2471
chr21 1317089 2.82% 1061
chr22 2520871 4.96% 1981
chr22_KI270731v1_random 580 0.38% 2
chr22_KI270733v1_random 1452 0.81% 4
chr22_KI270736v1_random 393 0.22% 1
chrUn_GL000195v1 2723 1.49% 5
chrUn_GL000216v2 251 0.14% 1
chrUn_GL000219v1 3949 2.20% 3
chrUn_GL000220v1 257 0.16% 1
chrUn_GL000224v1 636 0.35% 2
chrUn_KI270438v1 2489 2.21% 4
chrUn_KI270519v1 310 0.22% 1
chrUn_KI270742v1 299 0.16% 1
chrUn_KI270744v1 3325 1.97% 4
chrUn_KI270753v1 3109 4.94% 2
chrX 2498314 1.60% 1967
chrY 1225 <0.01% 2
3318 contigs with no values (123566408 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 76894 250 34719 1260.65 651
global segment-length histogram

Files

Filename Size md5
ENCFF090BYV.bed.gz 1.78 MB 1fbfad886eabb0d71b313cdfbb54ea88
ENCFF090BYV.tabix.bed.gz 823.32 KB 429e5b23bf11707c11c61d5b77964803
ENCFF090BYV.tabix.bed.gz.tbi 245.1 KB 95744907a2ce1a87a620ac411f0dc072
genomic_resource.yaml 3.12 KB 2bec173137b66cc1409f3336e1fc2f72
statistics/