Resource
| Id | Histone_ChIP-seq/ENCSR400VWA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR400VWA [biosample_summary="Homo sapiens CD14-positive monocyte male adult (21 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (21 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN671WWN|/analyses/ENCAN671WWN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF703QII|/files/ENCFF703QII/} processed by ChIP-seq ENCODE3 hg19 pipeline has 28504501 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR400VWA | float |
Histone_ChIP-seq_ENCSR400VWA |
Histone_ChIP-seq ENCSR400VWA [biosample_summary="Homo sapiens CD14-positive monocyte male adult (21 years)" and target="H3K4me1"]
|
 |
[1.7, 46.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 117554488 | 3.65% | 125247 |
| chr1 | 11435123 | 4.59% | 12090 |
| chr2 | 9440403 | 3.90% | 9991 |
| chr3 | 7387430 | 3.73% | 8100 |
| chr4 | 4461586 | 2.35% | 5364 |
| chr5 | 5856578 | 3.23% | 6436 |
| chr6 | 7077117 | 4.14% | 7936 |
| chr7 | 5100303 | 3.20% | 5811 |
| chr8 | 5018101 | 3.46% | 5485 |
| chr9 | 4955844 | 3.58% | 5171 |
| chr10 | 5711727 | 4.27% | 5914 |
| chr11 | 6202693 | 4.59% | 6142 |
| chr12 | 6358750 | 4.77% | 6705 |
| chr13 | 2419652 | 2.12% | 2844 |
| chr14 | 3714836 | 3.47% | 3790 |
| chr15 | 4100901 | 4.02% | 4185 |
| chr16 | 4176363 | 4.62% | 4140 |
| chr17 | 6206357 | 7.45% | 6124 |
| chr18 | 2223781 | 2.77% | 2432 |
| chr19 | 4935773 | 8.42% | 5124 |
| chr20 | 3704299 | 5.75% | 3504 |
| chr21 | 1574596 | 3.37% | 1561 |
| chr22 | 2519723 | 4.96% | 2384 |
| chrX | 2890137 | 1.85% | 3884 |
| chrY | 82415 | 0.14% | 130 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 125247 | 190 | 22331 | 938.58 | 644 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF498NWJ.bed.gz | 2.88 MB | bec0fe7da36bbfe08e46c7ec2f790fef |
| ENCFF498NWJ.tabix.bed.gz | 1.3 MB | a8644c1eb3e9584122278adb9f02ec26 |
| ENCFF498NWJ.tabix.bed.gz.tbi | 290.74 KB | 89e416db6b7bee34b8c427dfee7a0ed5 |
| genomic_resource.yaml | 1.99 KB | 676f60fa0bc267d5b363dbc3f48c391b |
| statistics/ |